LOCUS BC005059 1549 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens optic atrophy 3 (autosomal recessive, with chorea and
spastic paraplegia), mRNA (cDNA clone MGC:12948 IMAGE:2957964),
complete cds.
ACCESSION BC005059
VERSION BC005059.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1549)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1549)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 18 Row: a Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13376716.
FEATURES Location/Qualifiers
source 1..1549
/db_xref="H-InvDB:HIT000032191"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12948 IMAGE:2957964"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1549
/gene="OPA3"
/gene_synonym="FLJ22187"
/gene_synonym="MGA3"
/db_xref="GeneID:80207"
/db_xref="HGNC:HGNC:8142"
/db_xref="MIM:606580"
CDS 22..561
/gene="OPA3"
/gene_synonym="FLJ22187"
/gene_synonym="MGA3"
/codon_start=1
/product="optic atrophy 3 (autosomal recessive, with
chorea and spastic paraplegia)"
/protein_id="AAH05059.1"
/db_xref="GeneID:80207"
/db_xref="HGNC:HGNC:8142"
/db_xref="MIM:606580"
/translation="MVVGAFPMAKLLYLGIRQVSKPLANRIKEAARRSEFFKTYICLP
PAQLYHWVEMRTKMRIMGFRGTVIKPLNEEAAAELGAELLGEATIFIVGGGCLVLEYW
RHQAQQRHKEEEQRAAWNALRDEVGHLALALEALQAQVQAAPPQGALEELRTELQEVR
AQLCNPGRSASHAVPASKK"
BASE COUNT 352 a 436 c 459 g 302 t
ORIGIN
1 gtgccctgtg agaccgccaa gatggtggtg ggcgcgttcc ctatggcgaa gctgctatac
61 ttgggcatcc ggcaggtcag caagccgctt gccaaccgta ttaaggaggc cgcccgccga
121 agcgagttct tcaagaccta tatctgcctc ccgccggctc aactgtatca ctgggtggag
181 atgcggacca agatgcgcat catgggcttc cggggcacgg tcatcaagcc gctgaacgag
241 gaggcggcag ccgagctggg cgcagagctg ctgggcgaag ccaccatctt catcgtgggc
301 ggcggctgcc tagtgctgga gtactggcgc caccaggcgc agcagcgcca caaggaggag
361 gagcagcgtg ctgcctggaa cgcgctgcgg gacgaggtgg gccacctggc gctggcgctg
421 gaagcgctgc aggcgcaggt gcaggcggcg ccgccacagg gcgccctgga ggaactgcgc
481 acagagctgc aagaggtgcg cgcccagctc tgcaatcccg gccggtccgc ttcccacgca
541 gtgcctgcgt ccaagaaata ggagcttgct ggatggaacc tgaatttgga catggcctat
601 gtacctaacg tggccttctt cccgcaccac ccttgcctgc gctggcccag tggaaaccac
661 caggatcttg atgcaacttg gcatttggtt acccctgctg ataagagcag ccattacctg
721 ccactgggac cagcaggtga agcgttgcaa catagccccc tccatcatcc ttcacctcct
781 atcccccact ccaaaccagg acgacctgca aggtcccagc cagcaggaca ccgtgggcac
841 tctggcaaat gaaaaaatgg aacctggtct tgagctgaat caatgtgtta ttgttacccc
901 cacccccggt ttacctgatc agtgttaacc tttactggga cactcatctg ttacactgga
961 acaccttctt ctttttgtca atcggcacag accactgtaa ggaaatgcag tgtgttgcag
1021 tggccttttc tccccctcac cttctaaggt cagctctagc tgagcatcag tgctctctta
1081 aggaggaaaa aaacggtgcg gctgggagcg gtggctcacg cctgtaatcc tagcaccttg
1141 ggaggccgag gcgggcggat cacttgaggt caggagttcc agaccagcct ggccaacaag
1201 gtgaaactcc gtctctacta aaaatacaaa aattagccgg gtgtggtggg gtgcgcttgt
1261 aatcccagct actcgggagg ctgaggcagg agaattgctt gaacccatga ggtggaggtt
1321 gcggtgagcc aagatggcac cattgcaccc tagcctgggc aacagagcaa gacaccgtct
1381 taaaaccaaa agttaaccgg gcgtggtggt gggtgcctgt aatcctagct acttgggagg
1441 ctgaggcagg agaattgctt gaacttggga ggtggaggcc aagattgtac cactgtattc
1501 cagcccgggt gacagagcaa gactgtgtct caaaaaaaaa aaaaaaaaa
//