LOCUS BC005028 1880 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens phosphatidylinositol-specific phospholipase C, X
domain containing 1, mRNA (cDNA clone MGC:12582 IMAGE:3953383),
complete cds.
ACCESSION BC005028
VERSION BC005028.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1880)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1880)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 18 Row: m Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 8922994
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..1880
/db_xref="H-InvDB:HIT000032168_03"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12582 IMAGE:3953383"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1880
/gene="PLCXD1"
/gene_synonym="LL0XNC01-136G2.1"
/db_xref="GeneID:55344"
/db_xref="HGNC:HGNC:23148"
CDS 245..1216
/gene="PLCXD1"
/gene_synonym="LL0XNC01-136G2.1"
/codon_start=1
/product="PLCXD1 protein"
/protein_id="AAH05028.1"
/db_xref="GeneID:55344"
/db_xref="HGNC:HGNC:23148"
/translation="MGGQVSASNSFSRLHCRNANEDWMSALCPRLWDVPLHHLSIPGS
HDTMTYCLNKKSPISHEESRLLQLLNKALPCITRPVVLKWSVTQALDVTEQLDAGVRY
LDLRIAHMLEGSEKNLHFVHMVYTTALVEDTLTEISEWLERHPREVVILACRNFEGLS
EDLHEYLVACIKNIFGDMLCPRGEVPTLRQLWSRGQQVIVSYEDESSLRRHHELWPGV
PYWWGNRVKTEALIRYLETMKSCGRPGGLFVAGINLTENLQYVLAHPSESLEKMTLPN
LPRLSAWVREQCPGPGSRCTNIIAGDFIGADGFVSDVIALNQKLLWC"
BASE COUNT 419 a 539 c 536 g 386 t
ORIGIN
1 aataagaaca aaatctgcag ccacctggga agcctggcct cagtgtggaa gagaaggcag
61 caggattatt acagaacctt gtgaagccaa cgcgggcagc cgccaggagc tgcagaccga
121 gaggatctcg tcctttcttg cggcccaggg agaccaggcc tttcattctg ggctcgagac
181 caacaattcg aattccgaac tccccctgcg tgtgggactc aaggttgccc agggctcacc
241 tctgatgggc gggcaggtga gcgcttccaa cagcttctcg aggctgcact gcagaaatgc
301 caacgaggac tggatgtcgg cactgtgtcc ccggctctgg gatgtgcccc tccaccacct
361 ctccatccca gggagccacg acacgatgac gtactgcctg aacaagaagt cccccatttc
421 gcacgaggag tcccggctgc tgcagctgct gaacaaggcc ttgccctgca tcacgcgccc
481 tgtcgtgctg aaatggtccg tcacccaggc actggacgtc acagagcagc tggatgccgg
541 ggtgcggtac ctggacctgc ggatagccca catgctggag ggctcggaga agaacctgca
601 ctttgtccat atggtgtaca caacggcgct ggtggaggac acactcacgg aaatctcgga
661 gtggctggag cggcatccac gcgaggtggt catcctggcc tgcagaaact tcgaggggct
721 gagcgaggac ctgcacgagt acctggtcgc ctgtatcaag aacatcttcg gggacatgct
781 gtgtcctcgt ggggaggtgc cgacactgcg gcagctgtgg tcccggggcc aacaggtcat
841 cgtctcctat gaagacgaga gctccttgcg ccggcaccac gagctgtggc caggagtccc
901 ctactggtgg ggaaacaggg tgaagaccga ggccctcatc cgatacctgg agaccatgaa
961 gagctgcggc cgcccaggag ggttgttcgt ggccggcatc aacctcacgg agaacctgca
1021 gtacgttctg gcgcacccgt ccgagtccct ggagaagatg acgctgccca accttccgcg
1081 gctgagcgcg tgggtccgag agcagtgccc ggggccgggt tcacggtgca ccaacatcat
1141 cgcgggggac ttcatcggcg cagacggctt cgtcagtgac gtcatcgcgc tcaatcagaa
1201 gctgctgtgg tgctgacggg acccttctga agttcgggac gcggcggctg cagtttcacc
1261 cccgaatttc caagtattgt gactttgttt gggccaaatg ttggtgatca taggaccgat
1321 gataatacgt tttcattttc ccaaagtgct gggatgacag gcgtgagcca ccgcgcccgg
1381 cctatacctc attttctaca tgtcgcttgt tggagctgct ggttcaagtt cccagccagc
1441 caatggatgc cagcaccatt tttactcccc tttcccaagc aaatcgtgca tttttgtcta
1501 acgagagaca tcagtttctc aggatgatcc tcaagaacgt tatggagtcc atgttgcaat
1561 aggttctctt tgggacctaa tgactcattt tccaaaaatc cgcttctact tttggtaccc
1621 ggttgctacg gtgaaatgaa ggtgccccgc atccagaaag acgcactcct ggaccacaac
1681 cggcggctac ctcagcccca cggctctgca ggatcagggc tcgggcaggc cccgcggaga
1741 tgaagaattt gcagggagcc tccctgactt ccgtcggctg tgaatccttg tctgtcaggg
1801 gcgtatccac aaaatcaccg aattcataca gatcgtttaa ataaatgaac atcattaaag
1861 tcaaaaaaaa aaaaaaaaaa
//