LOCUS BC005005 2144 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens chromosome 17 open reading frame 80, mRNA (cDNA clone
MGC:1012 IMAGE:3544728), complete cds.
ACCESSION BC005005
VERSION BC005005.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2144)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2144)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC005005.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 8 Row: n Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34222156.
FEATURES Location/Qualifiers
source 1..2144
/db_xref="H-InvDB:HIT000032151"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1012 IMAGE:3544728"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2144
/gene="C17orf80"
/gene_synonym="FLJ20721"
/gene_synonym="HLC-8"
/gene_synonym="MIG3"
/db_xref="GeneID:55028"
/db_xref="HGNC:HGNC:29601"
CDS 115..1944
/gene="C17orf80"
/gene_synonym="FLJ20721"
/gene_synonym="HLC-8"
/gene_synonym="MIG3"
/codon_start=1
/product="chromosome 17 open reading frame 80"
/protein_id="AAH05005.1"
/db_xref="GeneID:55028"
/db_xref="HGNC:HGNC:29601"
/translation="MSDNPPRMEVCPYCKKPFKRLKSHLPYCKMIGPTIPTDQKVYQS
KPATLPRAKKMKGPIKDLIKAKGKELETENEERNSKLVVDKPEQTVKTFPLPAVGLER
AATTKADKDIKNPIQPSFKMLKNTKPMTTFQEETKAQFYASEKTSPKRELAKDLPKSG
ESRCNPSEAGASLLVGSIEPSLSNQDRKYSSTLPNDVQTTSGDLKLDKIDPQRQELLV
KLLDVPTGDCHISPKNVSDGVKRVRTLLSNERDSKGRDHLSGVPTDVTVTETPEKNTE
SLILSLKMSSLGKIQVMEKQEKGLTLGVETCGSKGNAEKSMSATEKQERTVMSHGCEN
FNTRDSVTGKESQGERPHLSLFIPRETTYQFHSVSQSSSQSLASLATTFLQEKKAEAQ
NHNCVPDVKALMESPEGQLSLEPKSDSQFQASHTGCQSPLCSAQRHTPQSPFTNHAAA
AGRKTLRSCMGLEWFPELYPGYLGLGVLPGKPQCWNAMTQKPQLISPQGERLSQVSLL
ERSSTHIRSLEPPAGLTTSNFSLMRLLGAVQKGWIRCNTTIRKSGFGGITMLFTGYFV
LCCSWSFRRLKKLCRPLPWKSTVPPCIGVAKTTGDCRSKTCLD"
BASE COUNT 685 a 469 c 486 g 504 t
ORIGIN
1 ggctgacatt cacgtttcat tctgccacac tcgggaacgg tgatcgggga agcatgggga
61 tccgggagaa gcacccacaa aactagcatc ctcctggagg agctcgggaa taggatgagt
121 gataatccac ccagaatgga agtgtgtcct tactgtaaga agccatttaa acgattaaaa
181 tcccacttgc catactgtaa gatgatagga ccaaccatac ctactgatca aaaagtttat
241 cagtccaagc cagctacact cccacgtgct aaaaagatga aaggaccaat caaagattta
301 attaaagcta aagggaaaga gttagagaca gagaatgaag aaagaaattc taagttggtg
361 gtggacaaac cagaacagac agtgaagacc tttccactgc cagctgttgg tttggaaaga
421 gcagctacta caaaggcaga taaagacatc aagaatccaa tccaaccatc cttcaaaatg
481 ttaaaaaata ctaaaccaat gactactttc caagaagaaa ccaaggctca gttttacgca
541 tcagagaaaa cctctcctaa aagagaactt gccaaagatt tgcctaaatc aggagaaagt
601 cgatgtaatc cttcagaagc tggagcgtct ttactggttg gctcaataga accttctttg
661 tcaaatcaag atagaaaata ttcctcaact ctacctaatg atgtacaaac tacctctggt
721 gatctcaaat tggacaaaat tgatccccaa agacaggaac ttctagtaaa attactagat
781 gtgcctactg gtgattgtca tatttctcca aagaatgtca gtgatggggt taaaagggta
841 agaacattat taagcaatga gagagattcc aaaggcaggg atcacctctc aggagtccct
901 actgatgtta cagttactga gactccagaa aagaacacag aatccctcat tttaagcctt
961 aaaatgagct cattaggtaa aatccaagtc atggagaaac aagagaaagg acttaccctg
1021 ggagtagaga cgtgtgggag caaaggaaat gcagagaaaa gtatgtctgc aacagaaaag
1081 caggaacgga ctgtcatgag ccatggctgt gagaacttca acaccaggga ttcagtcaca
1141 ggaaaggagt ctcaagggga aagaccacat ttaagtttgt tcattccgag ggagacgact
1201 taccagtttc attctgtatc gcagtcaagt agtcaaagtc ttgcctctct agctacaaca
1261 tttcttcaag aaaagaaagc agaagcccag aatcataatt gtgtccctga tgtaaaggca
1321 ttaatggaga gtcccgaggg acagttatct ctggagccca aatctgatag tcagttccaa
1381 gcatcacaca ctgggtgcca gagcccttta tgttcagccc agcgtcacac tcctcagagc
1441 cccttcacca atcatgctgc agctgctggc aggaagactc ttcgcagctg catggggctg
1501 gagtggtttc cagagctcta tcctggttac cttggactag gggtgttgcc agggaagcct
1561 cagtgttgga atgcaatgac ccagaagcca caacttatca gtccccaggg ggaaagactc
1621 tcacaagttt ctttgttgga acgaagctca actcatataa ggagtttgga accccctgcc
1681 ggacttacaa cctccaactt ctctctaatg aggctcttgg gagctgtaca aaaaggctgg
1741 atcaggtgca acaccaccat aaggaagagt ggattcggtg gcatcactat gctcttcaca
1801 ggatacttcg tcctgtgttg tagctggagt ttcagacgtc tgaaaaaatt gtgccgaccc
1861 ctgccctgga agagcacagt acctccatgc attggtgtgg cgaagacgac tggggattgc
1921 cgctctaaaa catgtttgga ttaggaagca cgtttaagta ggagaagcct tcgtgacttc
1981 tctctagtgc cttcgtgccc tgtgttgccc actgaattgc cctgtaacac ctaagtgtag
2041 tggtagcatt aagggatagc ttttcagccc tcaaggttat caggagcatt tgtatcactg
2101 ctataaataa agtagtatca cttgtcaaaa aaaaaaaaaa aaaa
//