LOCUS BC005001 2661 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens zinc finger CCCH-type containing 12A, mRNA (cDNA clone
MGC:4427 IMAGE:2958199), complete cds.
ACCESSION BC005001
VERSION BC005001.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2661)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2661)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: j Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13376631.
FEATURES Location/Qualifiers
source 1..2661
/db_xref="H-InvDB:HIT000032147"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4427 IMAGE:2958199"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2661
/gene="ZC3H12A"
/gene_synonym="dJ423B22.1"
/gene_synonym="FLJ23231"
/gene_synonym="MCPIP"
/gene_synonym="RP3-423B22.1"
/db_xref="GeneID:80149"
/db_xref="HGNC:HGNC:26259"
CDS 75..1874
/gene="ZC3H12A"
/gene_synonym="dJ423B22.1"
/gene_synonym="FLJ23231"
/gene_synonym="MCPIP"
/gene_synonym="RP3-423B22.1"
/codon_start=1
/product="zinc finger CCCH-type containing 12A"
/protein_id="AAH05001.1"
/db_xref="GeneID:80149"
/db_xref="HGNC:HGNC:26259"
/translation="MSGPCGEKPVLEASPTMSLWEFEDSHSRQGTPRPGQELAAEEAS
ALELQMKVDFFRKLGYSSTEIHSVLQKLGVQADTNTVLGELVKHGTATERERQTSPDP
CPQLPLVPRGGGTPKAPNLEPPLPEEEKEGSDLRPVVIDGSNVAMSHGNKEVFSCRGI
LLAVNWFLERGHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKILVFTPSRRVGG
KRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGERQEWKRFIEERLLMYSFVNDKFMP
PDDPLGRHGPSLDNFLRKKPLTLEHRKQPCPYGRKCTYGIKCRFFHPERPSCPQRSVA
DELRANALLSPPRAPSKDKNGRRPSPSSQSSSLLTESEQCSLDGKKLGAQASPGSRQE
GLTQTYAPSGRSLAPSGGSGSSFGPTDWLPQTLDSLPYVSQDCLDSGIGSLESQMSEL
WGVRGGGPGEPGPPRAPYTGYSPYGSELPATAAFSAFGRAMGAGHFSVPADYPPAPPA
FPPREYWSEPYPLPPPTSVLQEPPVQSPGAGRSPWGRADSLAKEQASVYTKLCGVFPP
HLVEAVMGRFPQLLDPQQLAAEILSYKSQHPSE"
BASE COUNT 549 a 833 c 779 g 500 t
ORIGIN
1 tggagacgcc gccggccgcc gctggcgcat ggcgggtagg agctgtggcg cggggccttc
61 caggagtctg agctatgagt ggcccctgtg gagagaagcc tgtcctggaa gccagcccca
121 ccatgagtct gtgggaattt gaggacagcc acagccgtca gggcacccca aggccgggtc
181 aagagctggc cgctgaggag gcctcggccc tggaactgca gatgaaggtg gacttcttcc
241 ggaagctggg ctattcatcc acggagatcc acagcgtcct gcagaagctg ggcgtccagg
301 cagacaccaa cacggtgctg ggtgagctgg tgaaacacgg gacagccacc gagcgggagc
361 gccagacctc accggacccc tgccctcagc tccctctagt cccgcggggt ggtggcaccc
421 ctaaggctcc caacctggag cctccactcc cagaagagga aaaggagggc agcgacctga
481 gaccagtggt catcgatggg agcaacgtgg ccatgagcca tgggaacaag gaggtcttct
541 cctgccgggg catcctgctg gcagtgaact ggtttctgga gcggggccac acagacatca
601 cagtgtttgt gccatcctgg aggaaggagc agcctcggcc cgacgtgccc atcacagacc
661 agcacatcct gcgggaactg gagaagaaga agatcctggt gttcacacca tcacgacgcg
721 tgggtggcaa gcgggtggtg tgctatgacg acagattcat tgtgaagctg gcctacgagt
781 ctgacgggat cgtggtttcc aacgacacat accgtgacct ccaaggcgag cggcaggagt
841 ggaagcgctt catcgaggag cggctgctca tgtactcctt cgtcaatgac aagtttatgc
901 cccctgatga cccactgggc cggcacgggc ccagcctgga caacttcctg cgtaagaagc
961 cactcacttt ggagcacagg aagcagccgt gtccctatgg aaggaaatgc acctatggga
1021 tcaagtgccg attcttccac ccagagcggc caagctgccc ccagcgctct gtggcagatg
1081 agctccgtgc caatgctctc ctctcacccc ccagagcccc aagcaaggac aaaaatggcc
1141 ggcggccttc accttcatcc cagtccagct ctctgctaac agagagtgag cagtgcagcc
1201 tggatgggaa gaagctgggg gcccaggcat ccccagggtc ccgccaagag ggtctaacac
1261 agacctatgc cccatcaggc aggagcctcg cacctagcgg gggcagtggc agcagctttg
1321 ggcccacaga ctggctccca cagacgctgg actcactccc gtacgtctcc caggattgcc
1381 tggactcggg cattggctcc ctggagagcc agatgtcgga actttggggg gttcgaggag
1441 gaggccctgg tgagccgggc ccaccccgag ccccttacac gggctacagt ccctatggat
1501 ctgagctccc agccaccgca gccttctctg cctttggccg ggccatgggt gctggccact
1561 tcagtgtccc tgccgactac ccacccgcgc cccctgcctt tccacctcga gagtactggt
1621 ctgaaccata cccactgccc ccacccacat cagtccttca ggagccccca gtgcagagcc
1681 caggggctgg caggagcccg tggggcaggg cagacagcct ggccaaggag caggccagcg
1741 tgtatactaa gctgtgtggt gtgtttcccc cgcacctggt ggaggctgtg atggggcgct
1801 tcccacagct cctggacccc cagcagctgg ctgccgagat cctctcctac aagtcccagc
1861 accccagtga gtaagctgcc tgtggctggc aagggcagca cccccagcct ccaagggccg
1921 tcaggctggg ctttgggcca ttgagcagcc cattcccagc cctgaggccc accccagagg
1981 ctggacagag ggaggattca agtcgggaag gaaacccaca aaccaaagat actgtaggat
2041 tggttctggc ccatgcagca cctctagctg tctgcctcag tgggtcagaa gcgatcaccc
2101 tgttgataca cattgtatct ctgtagttta aggagacgct gccggtaacg gcgtcggtcc
2161 gtggctgagg cccaaaccgt cttttctctc agagggtggg gagggaggtg ggggcagcag
2221 aggcctgggc tgggtgccct gtgcacgcca ccccacttcc gccctacccc tgggacgttg
2281 gccttggctg gctagttggg caccgtgtgc ctgccctcca agggcctcct ctacgccaat
2341 gaggcctcat ctgtgctctc gctgggcacg tggcttcatg tcagtaagca agatgcttct
2401 taataaccca ccttctgccc cactctattc cttatcctgc tgcccctgta ggggtcaagg
2461 gccctccgtc tacaccctct tcttctcctc catcctttat tcagagtcat ctcgcccttc
2521 cccatgggtg ggggaacctg tgtttgtttg tgtgcacatg taaattttaa atattttaag
2581 cagaaagtcc ttacctcctg taacacatca ataaagtaca atcattgtga gccctttcaa
2641 aaaaaaaaaa aaaaaaaaaa a
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