LOCUS BC005000 1942 bp mRNA linear HUM 03-OCT-2003
DEFINITION Homo sapiens cleavage and polyadenylation specific factor 6, 68kDa,
mRNA (cDNA clone MGC:4425 IMAGE:2958189), complete cds.
ACCESSION BC005000
VERSION BC005000.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1942)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1942)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: l Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5901927.
FEATURES Location/Qualifiers
source 1..1942
/db_xref="H-InvDB:HIT000032146"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4425 IMAGE:2958189"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1942
/gene="CPSF6"
/gene_synonym="CFIM"
/gene_synonym="CFIM68"
/gene_synonym="HPBRII-4"
/gene_synonym="HPBRII-7"
/db_xref="GeneID:11052"
/db_xref="MIM:604979"
CDS 48..1484
/gene="CPSF6"
/gene_synonym="CFIM"
/gene_synonym="CFIM68"
/gene_synonym="HPBRII-4"
/gene_synonym="HPBRII-7"
/codon_start=1
/product="CPSF6 protein"
/protein_id="AAH05000.1"
/db_xref="GeneID:11052"
/db_xref="MIM:604979"
/translation="MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNG
DAPEDRDYMDTLPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVH
SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCN
KQFLSQFEMQSRKTTQSGQMSGEGKAGPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGP
LPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPG
APPPAPHVNPAFFPPPTNSGMPTSDSRGPPPTDPYGRPPPYDRGDYGPPGREMDTART
PLSEAEFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDR
CKVLISSLQDCLHGIESKSYGSGSRRERSRERDHSRSREKSRRHKSRSRDRHDDYYRE
RSRERERHRDRDRDRDRERDREREYRHR"
misc_feature 294..515
/gene="CPSF6"
/gene_synonym="CFIM"
/gene_synonym="CFIM68"
/gene_synonym="HPBRII-4"
/gene_synonym="HPBRII-7"
/note="RRM; Region: RNA recognition motif"
/db_xref="CDD:smart00360"
BASE COUNT 580 a 418 c 449 g 495 t
ORIGIN
1 gacctgcagg aggcggcggc ggcggcggcg gccgaggctg aaggaagatg gcggacggcg
61 tggaccacat agacatttac gcggatgtcg gcgaagagtt caaccaggaa gctgaatatg
121 gtgggcatga tcagatagat ttgtatgacg atgtcatatc tccatctgca aataatggag
181 atgccccaga agaccgagat tacatggata ctctcccacc aactgttggt gatgatgtgg
241 gtaaaggagc agcaccaaat gttgtctata catatactgg aaagagaatt gcattatata
301 ttggaaatct aacatggtgg acaacagatg aagacttaac tgaagcagtt cattctttgg
361 gagtaaatga tattttggag ataaaatttt ttgaaaatcg agcaaatggc cagtcaaagg
421 ggtttgccct tgttggtgtt ggatctgaag catcttcaaa aaagttaatg gatctgttac
481 ctaaaagaga acttcatggt cagaatcctg ttgtaactcc atgcaataaa cagttcctga
541 gtcaatttga aatgcagtcc aggaaaacta cacaatcagg acaaatgtct ggggaaggta
601 aagctggtcc tcctctagct gggcctccta atcgaggaga tcgccctcca ccaccagttc
661 tttttcctgg acaacctttt gggcagcctc cattgggtcc acttcctcct ggccctccac
721 ctccagttcc aggctacggc ccccctcctg gcccaccacc tccacaacag ggaccacctc
781 cacctccagg cccctttcca cctcgtccac ccggtccact tgggccaccc cttacactag
841 ctcctcctcc gcatcttcct ggaccacctc caggtgcccc accgccagct ccgcatgtga
901 acccagcttt ctttcctcca ccaactaaca gtggcatgcc tacatcagat agccgaggtc
961 caccaccaac agatccatat gggcgacctc caccatatga taggggtgac tatggccccc
1021 ctggaaggga aatggatact gcaagaacgc cattgagtga agctgaattt gaagaaatca
1081 tgaatagaaa tagggcaatc tcaagcagtg ctatttcgag agctgtgtct gatgccagtg
1141 ctggtgatta tgggagtgct attgagacac tggtaactgc aatttcttta attaaacaat
1201 ccaaagtatc tgctgatgat cgttgcaaag ttcttattag ttctttgcaa gattgccttc
1261 atggaattga gtccaagtct tatggttctg gatcaagacg tgaacgatca agagagaggg
1321 accatagtag atcacgagaa aagagtcgac gtcataaatc ccgtagtaga gaccgtcatg
1381 acgattatta cagagagaga agcagagaac gagagaggca ccgggatcgt gaccgagacc
1441 gtgaccgaga gcgtgaccga gagcgcgaat atcgtcatcg ttagaagctg aaggaagagg
1501 atcaccttcc aagacaaaac agtcttcatg ggggaaaaat gacgcttgtc cagcagtttg
1561 cttcttgtga ttgaactgaa cctgtaagga ttcatggata aaatgaacag gaatagatct
1621 gaataaagca aatctgcata aatggtaacc agtagctcta cttttatttt ttatgttgct
1681 taactgtttt atttgaagga aacctgtgtg atttaaaaag ttatagcttt tgcaacttta
1741 ttactggtta tatacatttg gccattatga tgtgcaagca attggaaaaa aagtcaagta
1801 aatgcttgtt tttgtagtag tttgttcttg ttaaaaatgt ttatatgata atgtctgtaa
1861 acagcatcac tttgattaca atagatgtag tgttgtaata aactgtttaa tggggaaaaa
1921 aaaaaaaaaa aaaaaaaaaa aa
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