LOCUS BC004977 1971 bp mRNA linear HUM 21-JUL-2006
DEFINITION Homo sapiens interferon-induced protein with tetratricopeptide
repeats 3, mRNA (cDNA clone MGC:3834 IMAGE:2906188), complete cds.
ACCESSION BC004977
VERSION BC004977.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1971)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1971)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: l Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31542979.
FEATURES Location/Qualifiers
source 1..1971
/db_xref="H-InvDB:HIT000032126"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3834 IMAGE:2906188"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1971
/gene="IFIT3"
/gene_synonym="CIG-49"
/gene_synonym="GARG-49"
/gene_synonym="IFI60"
/gene_synonym="IRG2"
/gene_synonym="ISG60"
/gene_synonym="RIG-G"
/db_xref="GeneID:3437"
/db_xref="HGNC:HGNC:5411"
/db_xref="MIM:604650"
CDS 51..1523
/gene="IFIT3"
/gene_synonym="CIG-49"
/gene_synonym="GARG-49"
/gene_synonym="IFI60"
/gene_synonym="IRG2"
/gene_synonym="ISG60"
/gene_synonym="RIG-G"
/codon_start=1
/product="interferon-induced protein with
tetratricopeptide repeats 3"
/protein_id="AAH04977.1"
/db_xref="GeneID:3437"
/db_xref="HGNC:HGNC:5411"
/db_xref="MIM:604650"
/translation="MSEVTKNSLEKILPQLKCHFTWNLFKEDSVSRDLEDRVCNQIES
LNTEFKATMYNLLAYIKHLDGNNEAALECLRQAEELIQQEHADQAEIRSLVTWGNYAW
VYYHLGRLSDAQIYVDKVKQTCKKFSNPYSIEYSELDCEEGWTQLKCGRNERAKVCFE
KALEEKPNNPEFSSGLAIAMYHLDNHPEKQFSTDVLKQAIELSPDNQYVKVLLGLKLQ
KMNKEAEGEQFVEEALEKSPCQTDVLRSAAKFYRRKGDLDKAIELFQRVLESTPNNGY
LYHQIGCCYKAKVRQMQNTGESEASGNKEMIEALKQYAMDYSNKALEKGLNPLNAYSD
LAEFLETECYQTPFNKEVPDAEKQQSHQRYCNLQKYNGKSEDTAVQHGLEGLSISKKS
TDKEEIKDQPQNVSENLLPQNAPNYWYLQGLIHKQNGDLLQAAKCYEKELGRLLRDAP
SGIGSIFLSASELEDGSEEMGQGAVSSSPRELLSNSEQLN"
BASE COUNT 636 a 413 c 494 g 428 t
ORIGIN
1 caaaatcaac cgggacccca gcttttcaga actgcaggga aacagccatc atgagtgagg
61 tcaccaagaa ttccctggag aaaatccttc cacagctgaa atgccatttc acctggaact
121 tattcaagga agacagtgtc tcaagggatc tagaagatag agtgtgtaac cagattgaat
181 ctttaaacac tgagttcaaa gctacaatgt acaacttgtt ggcctacata aaacacctag
241 atggtaacaa cgaggcagcc ctggaatgct tacggcaagc tgaagagtta atccagcaag
301 aacatgctga ccaagcagaa atcagaagtc tagtcacttg gggaaactac gcctgggtct
361 actatcactt gggcagactc tcagatgctc agatttatgt agataaggtg aaacaaacct
421 gcaagaaatt ttcaaatcca tacagtattg agtattctga acttgactgt gaggaagggt
481 ggacacaact gaagtgtgga agaaatgaaa gggcgaaggt gtgttttgag aaggctctgg
541 aagaaaagcc caacaaccca gaattctcct ctggactggc aattgcgatg taccatctgg
601 ataatcaccc agagaaacag ttctctactg atgttttgaa gcaggccatt gagctgagtc
661 ctgataacca atacgtcaag gttctcttgg gcctgaaact gcagaagatg aataaagaag
721 ctgaaggaga gcagtttgtt gaagaagcct tggaaaagtc tccttgccaa acagatgtcc
781 tccgcagtgc agccaaattt tacagaagaa aaggtgacct agacaaagct attgaactgt
841 ttcaacgggt gttggaatcc acaccaaaca atggctacct ctatcaccag attgggtgct
901 gctacaaggc aaaagtaaga caaatgcaga atacaggaga atctgaagct agtggaaata
961 aagagatgat tgaagcacta aagcaatatg ctatggacta ttcgaataaa gctcttgaga
1021 agggactgaa tcctctgaat gcatactccg atctcgctga gttcctggag acggaatgtt
1081 atcagacacc attcaataag gaagtccctg atgctgaaaa gcaacaatcc catcagcgct
1141 actgcaacct tcagaaatat aatgggaagt ctgaagacac tgctgtgcaa catggtttag
1201 agggtttgtc cataagcaaa aaatcaactg acaaggaaga gatcaaagac caaccacaga
1261 atgtatctga aaatctgctt ccacaaaatg caccaaatta ttggtatctt caaggattaa
1321 ttcataagca gaatggagat ctgctgcaag cagccaaatg ttatgagaag gaactgggcc
1381 gcctgctaag ggatgcccct tcaggcatag gcagtatttt cctgtcagca tctgagcttg
1441 aggatggtag tgaggaaatg ggccagggcg cagtcagctc cagtcccaga gagctcctct
1501 ctaactcaga gcaactgaac tgagacagag gaggaaaaca gagcatcaga agcctgcagt
1561 ggtggttgtg acgggtagga cgataggaag acagggggcc ccaacctggg attgctgagc
1621 agggaagctt tgcatgttgc tctaaggtac atttttaaag agttgttttt tggccgggcg
1681 cagtggctca tgcctgtaat cccagcactt tgggaggccg aggtgggcgg atcacgaggt
1741 ctggagtttg agaccatcct ggctaacaca gtgaaatccc gtctctacta aaaatacaaa
1801 aaattagcca ggcgtggtgg ctggcacctg tagtcccagc tacttgggag gctgaggcag
1861 gagaatggcg tgaacctgga aggaagaggt tgcagtgagc caagattgcg cccctgcact
1921 ccagcctggg caacagagca agactccatc tcaaaaaaaa aaaaaaaaaa a
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