LOCUS BC004970 2610 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens Fas (TNFRSF6) associated factor 1, mRNA (cDNA clone
MGC:3486 IMAGE:2958207), complete cds.
ACCESSION BC004970
VERSION BC004970.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2610)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2610)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: d Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 19528653.
FEATURES Location/Qualifiers
source 1..2610
/db_xref="H-InvDB:HIT000032120"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3486 IMAGE:2958207"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2610
/gene="FAF1"
/gene_synonym="CGI-03"
/gene_synonym="hFAF1"
/gene_synonym="HFAF1s"
/db_xref="GeneID:11124"
/db_xref="HGNC:HGNC:3578"
/db_xref="MIM:604460"
CDS 454..2406
/gene="FAF1"
/gene_synonym="CGI-03"
/gene_synonym="hFAF1"
/gene_synonym="HFAF1s"
/codon_start=1
/product="Fas (TNFRSF6) associated factor 1"
/protein_id="AAH04970.1"
/db_xref="GeneID:11124"
/db_xref="HGNC:HGNC:3578"
/db_xref="MIM:604460"
/translation="MASNMDREMILADFQACTGIENIDEAITLLEQNNWDLVAAINGV
IPQENGILQSEYGGETIPGPAFNPASHPASAPTSSSSSAFRPVMPSRQIVERQPRMLD
FRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLH
LPKNNSLYVLTPDLPPPSSSSHAGALQESLNQNFMLIITHREVQREYNLNFSGSSTIQ
EVKRNVYDLTSIPVRHQLWEGWPTSATDDSMCLAESGLSYPCHRLTVGRRSSPAQTRE
QSEEQITDVHMVSDSDGDDFEDATEFGVDDGEVFGMASSALRKSPMMPENAENEGDAL
LQFTAEFSSRYGDCHPVFFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCS
QMLCAESIVSYLSQNFITWAWDLTKDSNRARFLTMCNRHFGSVVAQTIRTQKTDQFPL
FLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAAMEIFTAQQQEDIKDEDEREARENVK
REQDEAYRLSLEADRAKREAHEREMAEQFRLEQIRKEQEEEREAIRLSLEQALPPEPK
EENAEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASKGFPWDEYKLLSTFPRRDV
TQLDPNKSLLEVKLFPQETLFLEAKE"
BASE COUNT 717 a 646 c 665 g 582 t
ORIGIN
1 caggggcgga ggcggcggcc agggaggaag cggaggaggc ggaggcggcc gcggcgttcg
61 cccgcccgct cgctcgctcg gtttccccgc ccccgccggg cttaacgccg ctgaaggtat
121 ccgggtgcgc gctgtcgcaa cctgccctca tcctggcccg cgactgtaag accggaccca
181 catccagacc aatcttcctg tccgggctgc tgcgacgcgg gctccgcagg ttgcaggcgg
241 gcggccgggg cgcctgaagg ttaccgagtg catgagcgcc tagcgcttcc cgcgctgccc
301 cgcccgctgg cccgccgacc cgcccgccgg ctcgcccgcc agcccctcgg cgcccggcgg
361 cggcggcggc ggtggcggcg acggtcgcag gaggtgccgt ctgcctccca ggtgcgcgct
421 tcgctcccgg agccgcggaa ctcggcggcc gccatggcgt ccaacatgga ccgggagatg
481 atcctggcgg attttcaggc atgtactggc attgaaaaca ttgacgaagc tattacattg
541 cttgaacaaa ataattggga cttagtggca gctatcaatg gtgtaatacc acaggaaaat
601 ggcattctac aaagtgaata tggaggtgag accataccag gacctgcatt taatccagca
661 agtcatccag cttcagctcc tacttcctct tcttcttcag cgtttcgacc tgtaatgcca
721 tccaggcaga ttgtagaaag gcaacctcgg atgctggact tcagggttga atacagagac
781 agaaatgttg atgtggtact tgaagacacc tgtactgttg gagagattaa acagattcta
841 gaaaatgaac ttcagatacc tgtgtccaaa atgctgttaa aaggctggaa gacgggagat
901 gtggaagaca gtacggtcct aaaatctcta cacttgccaa aaaacaacag tctttatgtc
961 cttacaccag atttgccacc accttcatca tctagtcatg ctggtgccct gcaggagtca
1021 ttaaatcaaa acttcatgct gatcatcacc caccgagaag tccagcggga gtacaacctg
1081 aacttctcag gaagcagtac tattcaagag gtaaagagaa atgtgtatga ccttacaagt
1141 atccccgttc gccaccaatt atgggagggc tggccaactt ctgctacaga cgactcaatg
1201 tgtcttgctg aatcagggct ctcttatccc tgccatcgac ttacagtggg aagaagatct
1261 tcacctgcac agacccggga acagtcggaa gaacaaatca ccgatgttca tatggttagt
1321 gatagcgatg gagatgactt tgaagatgct acagaatttg gggtggatga tggagaagta
1381 tttggcatgg cgtcatctgc cttgagaaaa tctccaatga tgccagaaaa cgcagaaaat
1441 gaaggagatg ccttattaca atttacagca gagttttctt caagatatgg tgattgccat
1501 cctgtatttt ttattggctc attagaagct gcttttcaag aggccttcta tgtgaaagcc
1561 cgagatagaa agcttcttgc tatctacctc caccatgatg aaagtgtgtt aaccaacgtg
1621 ttctgctcac aaatgctttg tgctgaatcc attgtttctt atctgagtca aaattttata
1681 acctgggctt gggatctgac aaaggactcc aacagagcaa gatttctcac tatgtgcaat
1741 agacactttg gcagtgttgt ggcacaaacc attcggactc aaaaaacgga tcagtttccg
1801 cttttcctga ttattatggg aaagcgatca tctaatgaag tgttgaatgt gatacaaggg
1861 aacacaacag tagatgagtt aatgatgaga ctcatggctg caatggagat cttcacagcc
1921 caacaacagg aagatataaa ggacgaggat gaacgtgaag ccagagaaaa tgtgaagaga
1981 gagcaagatg aggcctatcg cctttcactt gaggctgaca gagcaaagag ggaagctcac
2041 gagagagaga tggcagaaca gtttcgtttg gagcagattc gcaaagaaca agaagaggaa
2101 cgtgaggcca tccggctgtc cttagagcaa gccctgcctc ctgagccaaa ggaagaaaat
2161 gctgagcctg tgagcaaact gcggatccgg acccccagtg gcgagttctt ggagcggcgt
2221 ttcctggcca gcaacaagct ccagattgtc tttgattttg tagcttccaa aggatttcca
2281 tgggatgagt acaagttact gagcaccttt cctaggagag acgtaactca actggaccca
2341 aataaatcat tattggaggt aaagttgttc cctcaagaaa cccttttcct tgaagcaaaa
2401 gagtaaacac ggcccagcgg tggaaccagc cattccttga caagccagca gcctgcgtca
2461 ggagaagggc tcctcgccaa cccacccaca cgctcgtctc actcaattca atgtcacact
2521 tctgcctctt gcaaaattgc tggaaaaagt aataataaat atagctactt aagatttccc
2581 atcaaaaaaa aaaaaaaaaa aaaaaaaaaa
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