LOCUS BC004965 1364 bp mRNA linear HUM 03-NOV-2006
DEFINITION Homo sapiens RER1 retention in endoplasmic reticulum 1 homolog (S.
cerevisiae), mRNA (cDNA clone MGC:1903 IMAGE:3546970), complete
cds.
ACCESSION BC004965
VERSION BC004965.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1364)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1364)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 8 Row: n Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 19923786.
FEATURES Location/Qualifiers
source 1..1364
/db_xref="H-InvDB:HIT000032116"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1903 IMAGE:3546970"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1364
/gene="RER1"
/gene_synonym="RP4-740C4.2"
/db_xref="GeneID:11079"
/db_xref="HGNC:HGNC:30309"
CDS 127..717
/gene="RER1"
/gene_synonym="RP4-740C4.2"
/codon_start=1
/product="RER1 retention in endoplasmic reticulum 1
homolog (S. cerevisiae)"
/protein_id="AAH04965.1"
/db_xref="GeneID:11079"
/db_xref="HGNC:HGNC:30309"
/translation="MSEGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRW
VVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLP
TKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCI
TMKRQIKHMIKYRYIPFTHGKRRYRGKEDAGKAFAS"
BASE COUNT 330 a 331 c 358 g 345 t
ORIGIN
1 gaagtgctcg ctgcagcttc ccggagccgg agcgcagcgc ctgcggccgc ccgtgccccg
61 ccgtcctcct tcccgcggcc gtgagggaga ccgcggctcg gccgtagcgg agctgcgagt
121 tacagaatgt ctgaagggga cagtgtggga gaatccgtcc atgggaaacc ttcggtggtg
181 tacagatttt tcacaagact tggacagatt tatcagtcct ggctagacaa gtccacaccc
241 tacacggctg tgcgatgggt cgtgacactg ggcctgagct ttgtctacat gattcgagtt
301 tacctgctgc agggttggta cattgtgacc tatgccttgg ggatctacca tctaaatctt
361 ttcatagctt ttctttctcc caaagtggat ccttccttaa tggaagactc agatgacggt
421 ccttcgctac ccaccaaaca gaacgaggaa ttccgcccct tcattcgaag gctcccagag
481 tttaaatttt ggcatgcggc taccaagggc atccttgtgg ctatggtctg tactttcttc
541 gacgctttca acgtcccggt gttctggccg attctggtga tgtacttcat catgctcttc
601 tgtatcacga tgaagaggca aatcaagcac atgattaagt accggtacat cccgttcaca
661 catgggaaga gaaggtacag aggcaaggag gatgccggca aggccttcgc cagctagaag
721 cgggactgag gctgcctcac gtgttgcaag aacagttttg agccattgtt aacaatgcct
781 tttttcttca cataaagtag ttgattacga gggagtcaaa ttttcttttt aaaaaggagc
841 ttcaatgatt tgtaactgaa atatcaggtt ctagaagaaa ctggcgctta aaccaaatcg
901 catggatttc tttttcagtg acgttcaagt gtttctcacg gatggaattc tagtcagctg
961 caggcgggaa gccaggcggg tggagcccat gggagcaagg gcgagtggcc ggtccccgct
1021 gtgccaggtg ggcaggcagg agcaaggcct gcgagggagg aacgggccgc tccccgccag
1081 ccgccttccc cagcagccgc aggtggtgcc agccactcca cagagcccga gggatgatct
1141 agcctgattc ctgcgtgtcc gaaagaactt aacgttttaa aggtgattgt caagtaactg
1201 tgtggggttc taatgccagt ttcctaattc catctcactg gagatgttta aagttggcct
1261 ctatcctaat gactcaaaac ttggttctta actaccatga ttgcttttga gggcccggaa
1321 ttataaatat atattatatt ttaaaaaaaa aaaaaaaaaa aaaa
//