LOCUS BC004927 1479 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens transgelin, mRNA (cDNA clone MGC:10432 IMAGE:3625512),
complete cds.
ACCESSION BC004927
VERSION BC004927.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1479)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1479)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 13 Row: k Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 48255906.
FEATURES Location/Qualifiers
source 1..1479
/db_xref="H-InvDB:HIT000032090"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10432 IMAGE:3625512"
/tissue_type="Uterus, endometrium adenocarcinoma"
/clone_lib="NIH_MGC_44"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1479
/gene="TAGLN"
/gene_synonym="SM22"
/gene_synonym="SMCC"
/gene_synonym="TAGLN1"
/gene_synonym="WS3-10"
/db_xref="GeneID:6876"
/db_xref="HGNC:HGNC:11553"
/db_xref="MIM:600818"
CDS 449..1054
/gene="TAGLN"
/gene_synonym="SM22"
/gene_synonym="SMCC"
/gene_synonym="TAGLN1"
/gene_synonym="WS3-10"
/codon_start=1
/product="transgelin"
/protein_id="AAH04927.1"
/db_xref="GeneID:6876"
/db_xref="HGNC:HGNC:11553"
/db_xref="MIM:600818"
/translation="MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGR
PDRGRLGFQVWLKNGVILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAE
DYGVIKTDMFQTVDLFEGKDMAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHK
REFTESQLQEGKHVIGLQMGSNRGASQAGMTGYGRPRQIIS"
BASE COUNT 328 a 421 c 448 g 282 t
ORIGIN
1 caagtcttca ctccttcctg cgagccctga ggaagccttg tgagtgcatt ggctggggct
61 tggagggaag ttgggctgga gctggacagg agcagtgggt gcatttcagg caggctctcc
121 tgaggtccca ggcgccagct ccagctccct ggctagggaa acccaccctc tcagtcagca
181 tgggggccca agctccaggc agggtgggct ggatcactag cgtcctggat ctctctcaga
241 ctgggcagcc ccgggctcat tgaaatgccc cggatgactt ggctagtgca gaggaattga
301 tggaaaccac cggggtgaga gggaggctcc ccatctcagc cagccacatc cacaaggtgt
361 gtgtaagggt gcaggcgccg gccggttagg ccaaggctct actgtctgtt gcccctccag
421 gagaacttcc aaggagcttt ccccagacat ggccaacaag ggtccttcct atggcatgag
481 ccgcgaagtg cagtccaaaa tcgagaagaa gtatgacgag gagctggagg agcggctggt
541 ggagtggatc atagtgcagt gtggccctga tgtgggccgc ccagaccgtg ggcgcttggg
601 cttccaggtc tggctgaaga atggcgtgat tctgagcaag ctggtgaaca gcctgtaccc
661 tgatggctcc aagccggtga aggtgcccga gaacccaccc tccatggtct tcaagcagat
721 ggagcaggtg gctcagttcc tgaaggcggc tgaggactat ggggtcatca agactgacat
781 gttccagact gttgacctct ttgaaggcaa agacatggca gcagtgcaga ggaccctgat
841 ggctttgggc agcttggcag tgaccaagaa tgatgggcac taccgtggag atcccaactg
901 gtttatgaag aaagcgcagg agcataagag ggaattcaca gagagccagc tgcaggaggg
961 aaagcatgtc attggccttc agatgggcag caacagaggg gcctcccagg ccggcatgac
1021 aggctacgga cgacctcggc agatcatcag ttagagcgga gagggctagc cctgagcccg
1081 gccctccccc agctccttgg ctgcagccat cccgcttagc ctgcctcacc cacacccgtg
1141 tggtaccttc agccctggcc aagctttgag gctctgtcac tgagcaatgg taactgcacc
1201 tgggcagctc ctccctgtgc ccccagcctc agcccaactt cttacccgaa agcatcactg
1261 ccttggcccc tccctcccgg ctgcccccat cacctctact gtctcctccc tgggctaagc
1321 aggggagaag cgggctgggg gtagcctgga tgtgggccaa gtccactgtc ctccttggcg
1381 gcaaaagccc attgaagaag aaccagccca gcctgccccc tatcttgtcc tggaatattt
1441 ttggggttgg aactcaaaaa aaaaaaaaaa aaaaaaaaa
//