LOCUS BC004915 1580 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens H2A histone family, member X, mRNA (cDNA clone MGC:4759 IMAGE:3537648), complete cds. ACCESSION BC004915 VERSION BC004915.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1580) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1580) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (21-MAR-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Nov 6, 2003 this sequence version replaced BC004915.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 11 Row: g Column: 14 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis. FEATURES Location/Qualifiers source 1..1580 /db_xref="H-InvDB:HIT000032080" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:4759 IMAGE:3537648" /tissue_type="Lung, small cell carcinoma" /clone_lib="NIH_MGC_7" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1580 /gene="H2AFX" /gene_synonym="H2A.X" /gene_synonym="H2A/X" /db_xref="GeneID:3014" /db_xref="HGNC:HGNC:4739" /db_xref="MIM:601772" CDS 44..475 /gene="H2AFX" /gene_synonym="H2A.X" /gene_synonym="H2A/X" /codon_start=1 /product="H2A histone family, member X" /protein_id="AAH04915.1" /db_xref="GeneID:3014" /db_xref="HGNC:HGNC:4739" /db_xref="MIM:601772" /translation="MSGRGKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERV GAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVT IAQGGVLPNIQAVLLPKKTSATVGPKAPSGGKKATQASQEY" BASE COUNT 264 a 551 c 494 g 271 t ORIGIN 1 ctagtgtttg agccgtcgtg cttcaccggt ctacctcgct agcatgtcgg gccgcggcaa 61 gactggcggc aaggcccgcg ccaaggccaa gtcgcgctcg tcgcgcgccg gcctccagtt 121 cccagtgggc cgtgtacacc ggctgctgcg gaagggccac tacgccgagc gcgttggcgc 181 cggcgcgcca gtgtacctgg cggcagtgct ggagtacctc accgctgaga tcctggagct 241 ggcgggcaat gcggcccgcg acaacaagaa gacgcgaatc atcccccgcc acctgcagct 301 ggccatccgc aacgacgagg agctcaacaa gctgctgggc ggcgtgacga tcgcccaggg 361 aggcgtcctg cccaacatcc aggccgtgct gctgcccaag aagaccagcg ccaccgtggg 421 gccgaaggcg ccctcgggcg gcaagaaggc cacccaggcc tcccaggagt actaagaggg 481 cccgcgccgc ggccggccgc caggcctccc catgccacca caaaggccct tttaagggcc 541 accaccgccc tcatggaaag agctgagccg cttcagactg cggggcaagc gggccgcggc 601 tcccttcccc tcccctcccc tcgcccgcct tcgccgcccg gcctcgagtc cccgcccgcc 661 cccgctcctg tcccgcaccg cctgccgcgt cggcctcggg ccctgccctg tccgccgtcc 721 gccctccggt agggttcggg ccttccggat gcggcttggg cgctcttcgg ggacctccgt 781 ggcgcggaag acccgagcct gccggggggt ggccggcggc gccgcacctg cccgcctcgg 841 cgttcgtgac tcagccgccc catcccgagt cgctaagggg ctgcggggag gccgcagcac 901 cttctggaag acttggcctt ccgctctgac gcagggccga ggtgggcagt ccaggccgag 961 aggccggcgg ccctgaaggt gagtgaggcc ctcggcagct gcagccgggg tgtctggtac 1021 ccccccggcg tggtgcttag cccaggactt tcagacgcgg ccgctggccg ggaggctttg 1081 gtgggagaga cgcgatcgct gatttcggtc tggcgcccct tctgcggccg ggacccaggc 1141 ctttcacatc agctctccct ccatcttcat tcataggtct gcgctggggc cgggacgaag 1201 cacttggtaa caggcacatc ttcctcccga gtgactgcct cctaggagga catttagggg 1261 agggcagagg cctgcagttt ggcttcacgg ctggctatgt ggacagcaag agtcgttttc 1321 gcggaagccg actggcagcc aggcctgtcg ggccccccga cgccgcccca tttcccttcc 1381 agcaaactca actcggcaat ccaagcacct agataccagc acaagtcggt taatccctgt 1441 ctggactgag cctccgttgg cttctgaact ggaattctgc agctaaccct tccacgacta 1501 gaaccttagg cattggggag ttttagatgg actaatttta ttaaaggatt gttttttttt 1561 taaaaaaaaa aaaaaaaaaa //