LOCUS BC004915 1580 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens H2A histone family, member X, mRNA (cDNA clone
MGC:4759 IMAGE:3537648), complete cds.
ACCESSION BC004915
VERSION BC004915.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1580)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1580)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Nov 6, 2003 this sequence version replaced BC004915.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 11 Row: g Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..1580
/db_xref="H-InvDB:HIT000032080"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4759 IMAGE:3537648"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1580
/gene="H2AFX"
/gene_synonym="H2A.X"
/gene_synonym="H2A/X"
/db_xref="GeneID:3014"
/db_xref="HGNC:HGNC:4739"
/db_xref="MIM:601772"
CDS 44..475
/gene="H2AFX"
/gene_synonym="H2A.X"
/gene_synonym="H2A/X"
/codon_start=1
/product="H2A histone family, member X"
/protein_id="AAH04915.1"
/db_xref="GeneID:3014"
/db_xref="HGNC:HGNC:4739"
/db_xref="MIM:601772"
/translation="MSGRGKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERV
GAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVT
IAQGGVLPNIQAVLLPKKTSATVGPKAPSGGKKATQASQEY"
BASE COUNT 264 a 551 c 494 g 271 t
ORIGIN
1 ctagtgtttg agccgtcgtg cttcaccggt ctacctcgct agcatgtcgg gccgcggcaa
61 gactggcggc aaggcccgcg ccaaggccaa gtcgcgctcg tcgcgcgccg gcctccagtt
121 cccagtgggc cgtgtacacc ggctgctgcg gaagggccac tacgccgagc gcgttggcgc
181 cggcgcgcca gtgtacctgg cggcagtgct ggagtacctc accgctgaga tcctggagct
241 ggcgggcaat gcggcccgcg acaacaagaa gacgcgaatc atcccccgcc acctgcagct
301 ggccatccgc aacgacgagg agctcaacaa gctgctgggc ggcgtgacga tcgcccaggg
361 aggcgtcctg cccaacatcc aggccgtgct gctgcccaag aagaccagcg ccaccgtggg
421 gccgaaggcg ccctcgggcg gcaagaaggc cacccaggcc tcccaggagt actaagaggg
481 cccgcgccgc ggccggccgc caggcctccc catgccacca caaaggccct tttaagggcc
541 accaccgccc tcatggaaag agctgagccg cttcagactg cggggcaagc gggccgcggc
601 tcccttcccc tcccctcccc tcgcccgcct tcgccgcccg gcctcgagtc cccgcccgcc
661 cccgctcctg tcccgcaccg cctgccgcgt cggcctcggg ccctgccctg tccgccgtcc
721 gccctccggt agggttcggg ccttccggat gcggcttggg cgctcttcgg ggacctccgt
781 ggcgcggaag acccgagcct gccggggggt ggccggcggc gccgcacctg cccgcctcgg
841 cgttcgtgac tcagccgccc catcccgagt cgctaagggg ctgcggggag gccgcagcac
901 cttctggaag acttggcctt ccgctctgac gcagggccga ggtgggcagt ccaggccgag
961 aggccggcgg ccctgaaggt gagtgaggcc ctcggcagct gcagccgggg tgtctggtac
1021 ccccccggcg tggtgcttag cccaggactt tcagacgcgg ccgctggccg ggaggctttg
1081 gtgggagaga cgcgatcgct gatttcggtc tggcgcccct tctgcggccg ggacccaggc
1141 ctttcacatc agctctccct ccatcttcat tcataggtct gcgctggggc cgggacgaag
1201 cacttggtaa caggcacatc ttcctcccga gtgactgcct cctaggagga catttagggg
1261 agggcagagg cctgcagttt ggcttcacgg ctggctatgt ggacagcaag agtcgttttc
1321 gcggaagccg actggcagcc aggcctgtcg ggccccccga cgccgcccca tttcccttcc
1381 agcaaactca actcggcaat ccaagcacct agataccagc acaagtcggt taatccctgt
1441 ctggactgag cctccgttgg cttctgaact ggaattctgc agctaaccct tccacgacta
1501 gaaccttagg cattggggag ttttagatgg actaatttta ttaaaggatt gttttttttt
1561 taaaaaaaaa aaaaaaaaaa
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