LOCUS BC004913 2066 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens papillary renal cell carcinoma
(translocation-associated), mRNA (cDNA clone MGC:4723
IMAGE:3535413), complete cds.
ACCESSION BC004913
VERSION BC004913.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2066)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2066)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC004913.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 11 Row: i Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40807446.
FEATURES Location/Qualifiers
source 1..2066
/db_xref="H-InvDB:HIT000032078"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4723 IMAGE:3535413"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2066
/gene="PRCC"
/gene_synonym="MGC17178"
/gene_synonym="MGC4723"
/gene_synonym="RCCP1"
/gene_synonym="TPRC"
/db_xref="GeneID:5546"
/db_xref="HGNC:HGNC:9343"
/db_xref="MIM:179755"
CDS 207..1682
/gene="PRCC"
/gene_synonym="MGC17178"
/gene_synonym="MGC4723"
/gene_synonym="RCCP1"
/gene_synonym="TPRC"
/codon_start=1
/product="papillary renal cell carcinoma
(translocation-associated)"
/protein_id="AAH04913.1"
/db_xref="GeneID:5546"
/db_xref="HGNC:HGNC:9343"
/db_xref="MIM:179755"
/translation="MSLVAYASSDESEPDEAEPEPEEEEAVAPTSGPALGGLFASLPA
PKGPALLPPPPQMLAPAFPPPLLLPPPTGDPRLQPPPPLPFGLGGFPPPPGVSPAEAA
GVGEGLGLGLPSPRGPGLNLPPPIGGAGPPLGLPKPKKRKEPVKIAAPELHKGDSDSE
EDEPTKKKTILQGSSEGTGLSALLPQPKNLTVKETNRLLLPHAFSRKPSDGSPDTKPS
RLASKTKTSSLAPVVGTTTTTPSPSAIKAAAKSAALQVTKQITQEEDDSDEEVAPENF
FSLPEKAEPPGVEPYPYPIPTVPEELPPGTEPEPAFQDDAANAPLEFKMAAGSSGAPW
MPKPGDDYSYNQFSTYGDANAAGAYYQDYYSGGYYPAQDPALVPPQEIAPDASFIDDE
AFKRLQGKRNRGREEINFVEIKGDDQLSGAQQWMTKSLTEEKTMKSFSKKKGEQPTGQ
QRRKHQITYLIHQAKERELELKNTWSENKLSRRQTQAKYGF"
BASE COUNT 487 a 618 c 550 g 411 t
ORIGIN
1 aggagcttaa gtgaagaggt acgccttgtt cggtggaaat cagccgtagc catgagtttc
61 tgccggggct agccctagag tacggagcag gcggactttt cggttccccg ccccgccagg
121 tggcggggcc tactaggcct ccgggcatcc ccggtctcaa gtaggcctca tctgccggca
181 agggcgcccg aaacgcggga ggcgccatgt cgctggttgc ttacgccagc agcgatgaga
241 gcgagccgga tgaggctgag cccgagccgg aggaagagga ggcggtggct cctacatctg
301 ggcccgcttt agggggcttg ttcgcttctc tccctgcgcc caagggtccg gccttgctgc
361 ctccgccccc tcagatgctg gcgccagcct ttcccccgcc gctgttgctt cccccaccca
421 ccggagaccc caggcttcag cctcctcccc ccttgccctt cggcctggga ggcttccccc
481 cacctccagg cgtgagcccg gctgaagcgg cgggagttgg ggagggactg ggattggggt
541 tgccctcgcc ccgaggccct ggcctcaatc tgccccctcc aattggcggt gccggtcccc
601 cgctggggct tcccaagcca aagaagagga aagagcccgt gaagatcgcg gcgccggagt
661 tgcataaggg agattcagat tctgaggaag atgaacccac aaagaagaaa actatccttc
721 agggatccag tgaggggact ggtttgtctg ccttgcttcc ccaacctaaa aacctgactg
781 tgaaagagac taacaggttg ctcctgcccc atgccttctc ccgcaaaccc tcggatggct
841 cccctgatac taagccctcc agactggctt ctaagaccaa gacttcctct cttgcccctg
901 ttgtgggcac cacaaccacc actccgtcgc cctctgctat caaggctgct gccaagagtg
961 ctgccctgca ggtgacaaag cagatcacgc aggaagaaga cgacagtgat gaggaagtag
1021 cccccgaaaa ctttttctcc ctccctgaaa aggctgagcc acctggagtt gagccatacc
1081 cttaccccat ccccactgtc cctgaagagc tgcctccagg cacggaacca gagccggctt
1141 tccaggacga tgcagccaat gccccccttg aattcaagat ggcagcaggt tcaagtgggg
1201 ccccttggat gcctaagcct ggggacgact acagctacaa tcagttttcc acatatggcg
1261 atgccaatgc cgctggtgct tattatcagg attattacag tggtggctac tatcctgcac
1321 aggacccggc cctggtcccc ccccaggaaa ttgccccaga tgcctccttc atcgatgacg
1381 aagcatttaa gcggctgcag ggcaagagga accgagggag agaagaaatc aactttgtgg
1441 agatcaaagg tgatgaccag ctcagtgggg cccagcaatg gatgactaag tcattgacag
1501 aagagaaaac catgaagtca ttcagcaaaa agaaaggtga gcagccaaca ggccagcagc
1561 ggcggaaaca ccagatcaca tatcttattc atcaggccaa ggagcgggag ctggaactga
1621 agaacacctg gtcagagaac aagctcagcc gccgtcagac ccaagccaaa tatggattct
1681 agggctctgg aactgattgc tcccaggatc tcctgccagc ccagctggcc tggcccccag
1741 cttcacctct gggaccccag ctgctctaag cccaggatct ctttccccaa ggacccagcc
1801 ctcgcctctg cgagaatgaa catatttgat agatttttct taacaagtta gaaaattcag
1861 ctcctttctg tcctggagct agcaaagact tgtgtgatgc ctccgaaggg gctctgagtt
1921 ctggggtggg agttttgctc tctgtcaggt gtgataaaat gttgaaccct ccccaccacc
1981 actttttttt ttttaaacca gggatgtctg ttgaaataaa acattcagtc tgacaaaaaa
2041 aaaaaaaaaa aaaaaaaaaa aaaaaa
//