LOCUS BC004911 1517 bp mRNA linear HUM 07-OCT-2003
DEFINITION Homo sapiens Bernardinelli-Seip congenital lipodystrophy 2
(seipin), mRNA (cDNA clone MGC:4694 IMAGE:3533654), complete cds.
ACCESSION BC004911
VERSION BC004911.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1517)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1517)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 20, 2003 this sequence version replaced BC004911.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 11 Row: n Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21362089.
FEATURES Location/Qualifiers
source 1..1517
/db_xref="H-InvDB:HIT000032077"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4694 IMAGE:3533654"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1517
/gene="BSCL2"
/gene_synonym="GNG3LG"
/gene_synonym="MGC4694"
/gene_synonym="SEIPIN"
/db_xref="GeneID:26580"
/db_xref="MIM:606158"
CDS 198..1394
/gene="BSCL2"
/gene_synonym="GNG3LG"
/gene_synonym="MGC4694"
/gene_synonym="SEIPIN"
/codon_start=1
/product="BSCL2 protein"
/protein_id="AAH04911.1"
/db_xref="GeneID:26580"
/db_xref="MIM:606158"
/translation="MVNDPPVPALLWAQEVGQVLAGRARRLLLQFGVLFCTILLLLWV
SVFLYGSFYYSYMPTVSHLSPVHFYYRTDCDSSTTSLCSFPVANVSLTKGGRDRVLMY
GQPYRVTLELELPESPVNQDLGMFLVTISCYTRGGRIISTSSRSVMLHYRSDLLQMLD
TLVFSSLLLFGFAEQKQLLEVELYADYRENSYVPTTGAIIEIHSKRIQLYGAYLRIHA
HFTGLRYLLYNFPMTCAFIGVASNFTFLSVIVLFSYMQWVWGGIWPRHRFSLQVNIRK
RDNSRKEVQRRISAHQPGPEGQEESTPQSDVTEDGESPEDPSGTEGQLSEEEKPDQQP
LSGEEELEPEASDGSGSWEDAALLTEANLPAPAPASASAPVLETLGSSEPAGGALRQR
PTCSSS"
BASE COUNT 322 a 453 c 397 g 345 t
ORIGIN
1 cccgtctcac ggttgccctg gcagcgcgcg aggctggtga gtcggcagcc ctgtggcagc
61 cggcgggctg gtttccatgg ttgcacgatt aggaaccacc agctgctgca tcccatggcc
121 aggggtggcg tccaggtggc agagcagcta ggaacgcaag gcctgaacct ggggccagac
181 accctgctct cccggccatg gtcaacgacc ctccagtacc tgccttactg tgggcccagg
241 aggtgggcca agtcttggca ggccgtgccc gcaggctgct gctgcagttt ggggtgctct
301 tctgcaccat cctccttttg ctctgggtgt ctgtcttcct ctatggctcc ttctactatt
361 cctatatgcc gacagtcagc cacctcagcc ctgtgcattt ctactacagg accgactgtg
421 attcctccac cacctcactc tgctccttcc ctgttgccaa tgtctcgctg actaagggtg
481 gacgtgatcg ggtgctgatg tatggacagc cgtatcgtgt taccttagag cttgagctgc
541 cagagtcccc tgtgaatcaa gatttgggca tgttcttggt caccatttcc tgctacacca
601 gaggtggccg aatcatctcc acttcttcgc gttcggtgat gctgcattac cgctcagacc
661 tgctccagat gctggacaca ctggtcttct ctagcctcct gctatttggc tttgcagagc
721 agaagcagct gctggaggtg gaactctacg cagactatag agagaactcg tacgtgccga
781 ccactggagc gatcattgag atccacagca agcgcatcca gctgtatgga gcctacctcc
841 gcatccacgc gcacttcact gggctcagat acctgctata caacttcccg atgacctgcg
901 ccttcatagg tgttgccagc aacttcacct tcctcagcgt catcgtgctc ttcagctaca
961 tgcagtgggt gtgggggggc atctggcccc gacaccgctt ctctttgcag gttaacatcc
1021 gaaaaagaga caattcccgg aaggaagtcc aacgaaggat ctctgctcat cagccagggc
1081 ctgaaggcca ggaggagtca actccgcaat cagatgttac agaggatggt gagagccctg
1141 aggatccctc agggacagag ggtcagctgt ccgaggagga gaaaccagat cagcagcccc
1201 tgagcggaga agaggagcta gagcctgagg ccagtgatgg ttcaggctcc tgggaagatg
1261 cagctttgct gacggaggcc aacctgcctg ctcctgctcc tgcttctgct tctgcccctg
1321 tcctagagac tctgggcagc tctgaacctg ctgggggtgc tctccgacag cgccccacct
1381 gctctagttc ctgaagaaaa ggggcagact cctcacattc cagcactttc ccacctgact
1441 cctctcccct cgtttttcct tcaataaact attttgtgtc aaaaaaaaaa aaaaaaaaaa
1501 aaaaaaaaaa aaaaaaa
//