LOCUS BC004819 1837 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens pallidin homolog (mouse), mRNA (cDNA clone MGC:4983
IMAGE:3450397), complete cds.
ACCESSION BC004819
VERSION BC004819.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1837)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1837)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 3 Row: l Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38505202.
FEATURES Location/Qualifiers
source 1..1837
/db_xref="H-InvDB:HIT000032033"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4983 IMAGE:3450397"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1837
/gene="PLDN"
/gene_synonym="PALLID"
/db_xref="GeneID:26258"
/db_xref="HGNC:HGNC:8549"
/db_xref="MIM:604310"
CDS 43..561
/gene="PLDN"
/gene_synonym="PALLID"
/codon_start=1
/product="pallidin homolog (mouse)"
/protein_id="AAH04819.1"
/db_xref="GeneID:26258"
/db_xref="HGNC:HGNC:8549"
/db_xref="MIM:604310"
/translation="MSVPGPSSPDGALTRPPYCLEAGEPTPGLSDTSPDEGLIEDLTI
EDKAVEQLAEGLLSHYLPDLQRSKQALQELTQNQVVLLDTLEQEISKFKECHSMLDIN
ALFAEAKHYHAKLVNIRKEMLMLHEKTSKLKKRALKLQQKRQKEELEREQQREKEFER
EKQLTARPAKRM"
BASE COUNT 551 a 320 c 422 g 544 t
ORIGIN
1 gccacacgtt tgcttcttcc ctgtgttccc agctggaggg acatgagtgt ccctgggccg
61 tcgtctccgg acggggccct gacacggcca ccctactgcc tggaggccgg ggagccgacg
121 cctggtttaa gtgacacttc tccagatgaa gggttaatag aggacttgac tatagaagac
181 aaagcagtgg agcaactggc agaaggattg ctttctcatt atttgccaga tctgcagaga
241 tcaaaacaag ccctccagga actcacacag aaccaagttg tattgttaga cacactggaa
301 caagagattt caaaatttaa agaatgtcat tctatgttgg atattaatgc tttgtttgct
361 gaggctaaac actatcatgc caagttggtg aatataagaa aagagatgct gatgcttcat
421 gaaaaaacat caaagttaaa aaaaagagca cttaaactgc agcagaagag gcaaaaagaa
481 gagttggaaa gggagcagca acgagagaag gagtttgaaa gagaaaagca gttaactgcc
541 agaccagcca aaaggatgtg aaaagttgtg tttgtgtgtt ttcttctcct gtcccatatt
601 tgggttatga tgactcaagt gtagactgaa gttgaggtag tgccttatgc cattatgtca
661 tatgttgaaa tccttattcc ggtattactg tgtctccatg ccttttttcc aagtagcaga
721 cgtcatgttg catggttttt gatatttata tgtaagtttt tcaaattttg cttaatttta
781 aaatttatta ttttgatctt gaattattta taaactggaa agtggtttga ttattgtgag
841 tcaaaactct aagtggttaa aaattagtat gaatttttta gcttcttaat gaatatggat
901 ttaaaactct ccagttctta ttttatgaaa tgacttgcct ttctggtaat acaatgctga
961 ttttttagta attgcctttt cattactttg ttaagaagaa atgccagctg tttaatcaca
1021 cctacccctg gaaaagaggt aaaccttttg aacagttgaa tttcatcaga agctctatag
1081 ctttttggtg agaggaagtg atactcttta ttacaagaaa caaggaatta acaaaaataa
1141 ggaacttgtt gctacctttc ttttctgttg aacattaaaa ataatttggt ttgtggactg
1201 ggcatggtgg cttatggaaa agaggtgagc ctttgtgaag aacataatgg aaaagtgcat
1261 gtacgggaaa taacagcact ttaggtgtag ttcaggtgag caagatgcca gatagtttct
1321 actaaccata tactctttct gcttcttagc gtcgttgtca ctgcttctgt ggcttttggg
1381 ttcaaagtag attatatata ttcctaaagc ttggtggagg tagtggagct atcacacact
1441 caaatgagct tgtatattta taatacaata tagtattata gtaacagtta tcatacactg
1501 agatatagtt tctgtgcttg taaaaaattc ttgaagtgag gccgggtgcg gtggctcatg
1561 cctgtaatcc caacgctttg ggacgccgag gcgggtggat catgaggtca aaagattgag
1621 accatcctgg ccaacatggt gaaaccccgt ctctactaga aatacaaaaa ttagctgggt
1681 gtgggggcgt gcgcctgtag tcccagctac ttgggaggct gaggcaggag aattgcttga
1741 acccaggagg cagaggttgc agtaagccaa gatcgtgcca ctgcactcca gccttggtga
1801 cagagcaaga ctccgtctcc aaaaaaaaaa aaaaaaa
//