LOCUS BC004542 2166 bp mRNA linear HUM 03-NOV-2008 DEFINITION Homo sapiens plexin B2, mRNA (cDNA clone IMAGE:3951420), partial cds. ACCESSION BC004542 VERSION BC004542.2 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2166) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2166) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (14-MAR-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Dec 9, 2003 this sequence version replaced BC004542.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 15 Row: h Column: 17 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis. FEATURES Location/Qualifiers source 1..2166 /db_xref="H-InvDB:HIT000032013" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:3951420" /tissue_type="Ovary, adenocarcinoma" /clone_lib="NIH_MGC_9" /lab_host="DH10B-R" /note="Vector: pOTB7" gene <1..2166 /gene="PLXNB2" /gene_synonym="dJ402G11.3" /gene_synonym="MM1" /gene_synonym="Nbla00445" /gene_synonym="PLEXB2" /db_xref="GeneID:23654" /db_xref="HGNC:HGNC:9104" /db_xref="MIM:604293" CDS <1..1429 /gene="PLXNB2" /gene_synonym="dJ402G11.3" /gene_synonym="MM1" /gene_synonym="Nbla00445" /gene_synonym="PLEXB2" /codon_start=2 /product="PLXNB2 protein" /protein_id="AAH04542.2" /db_xref="GeneID:23654" /db_xref="HGNC:HGNC:9104" /db_xref="MIM:604293" /translation="YYTDIMHTLFLELLEQYVVAKNPKLMLRRSETVVERMLSNWMSI CLYQYLKDSAGEPLYKLFKAIKHQVEKGPVDAVQKKAKYTLNDTGLLGDDVEYAPLTV SVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTA QILSDLDLTSQQEGRWKRVNTLMHYNVRDGATLILSKVGVSQQPEDSQQDLPGERHAL LEEENRVWHLVRPTDEVDEGKSKRGSVKEKERTKAITEIYLTRLLSVKGTLQQFVDNF FQSVLAPGHAVPPAVKYFFDFLDEQAEKHNIQDEDTIHIWKTNSLPLRFWVNILKNPH FIFDVHVHEVVDASLSVIAQTFMDACTRTEHKLSRDSPSNKLLYAKEISTYKKMVEDY YKGIRQMVQVSDQDMNTHLAEISRAHTDSLNTLVALHQLYQYTQKYYDEIINALEEDP AAQKMQLAFRLQQIAAALENKVTDL" BASE COUNT 488 a 663 c 640 g 375 t ORIGIN 1 gtactacacg gacatcatgc acacgctctt cctggagctc ctggagcagt acgtggtggc 61 caagaacccc aagctgatgc tgcgcaggtc tgagactgtg gtggagagga tgctgtccaa 121 ctggatgtcc atctgcctgt accagtacct caaggacagt gccggggagc ccctgtacaa 181 gctcttcaag gccatcaaac atcaggtgga aaagggcccg gtggatgcgg tacagaagaa 241 ggccaagtac actctcaacg acacggggct gctgggggat gatgtggagt acgcacccct 301 gacggtgagc gtgatcgtgc aggacgaggg agtggacgcc atcccggtga aggtcctcaa 361 ctgtgacacc atctcccagg tcaaggagaa gatcattgac caggtgtacc gtgggcagcc 421 ctgctcctgc tggcccaggc cagacagcgt ggtcctggag tggcgtccgg gctccacagc 481 gcagatcctg tcggacctgg acctgacgtc acagcaggag ggccggtgga agcgcgtcaa 541 cacccttatg cactacaatg tccgggatgg agccaccctc atcctgtcca aggtgggggt 601 ctcccagcag ccggaggaca gccagcagga cctgcctggg gagcgccatg ccctcctgga 661 ggaggagaac cgggtgtggc acctggtgcg gccgaccgac gaggtggacg agggcaagtc 721 caagagaggc agcgtgaaag agaaggagcg gacgaaggcc atcaccgaga tctacctgac 781 gcggctgctc tcagtcaagg gcacactgca gcagtttgtg gacaacttct tccagagcgt 841 gctggcgcct gggcacgcgg tgccacctgc agtcaagtac ttcttcgact tcctggacga 901 gcaggcagag aagcacaaca tccaggatga agacaccatc cacatctgga agacgaacag 961 tttaccgctc cggttctggg tgaacatcct caagaacccc cacttcatct ttgacgtgca 1021 tgtccacgag gtggtggacg cctcgctgtc agtcatcgcg cagaccttca tggatgcctg 1081 cacgcgcacg gagcataagc tgagccgcga ttctcccagc aacaagctgc tgtacgccaa 1141 ggagatctcc acctacaaga agatggtgga ggattactac aaggggatcc ggcagatggt 1201 gcaggtcagc gaccaggaca tgaacacaca cctggcagag atttcccggg cgcacacgga 1261 ctccttgaac accctcgtgg cactccacca gctctaccaa tacacgcaga agtactatga 1321 cgagatcatc aatgccttgg aggaggatcc tgccgcccag aagatgcagc tggccttccg 1381 cctgcagcag attgccgctg cactggagaa caaggtcact gacctctgac ctacaatctc 1441 cagtgctgcc ttgggacata ggtacctgag gtacctgaga gcccctcagg ggaggaggcc 1501 gagtggctgt ggctgaggcc cccaccctcc cctggaacgc gccccaagcc ggagtgggtg 1561 cagccggaac ccgcccagcg tctagactgt agcatcttcc tctgagcaat accgccgggc 1621 accgcaccag caccagcccc agccccagct ccctccggcc gcagaaccag catcgggtgt 1681 tcactgtcga gtctcgagtg atttgaaaat gtgccttacg ctgccacgct gggggcagct 1741 ggcctccgcc tccgcccacg caccagcagc cgcctccatg ccctaggttg ggcccctggg 1801 ggatctgagg gcctgtggcc cccagggcaa gttcccagat cctatgtctg tctgtccacc 1861 acgagatggg aggaggagaa aaagcggtac gatgccttcc tgacctcacc ggcctcccca 1921 agggtgccgg cactctgggt ggactcacgg ctgctgggcc ccacgtcaaa ggtcaagtga 1981 gacgtaggtc aagtcctacg tcggggccca gacatcctgg ggtcctggtc tgtcagacag 2041 gctgccctag agccccaccc agtccggggg gactgggagc agttccaaga ccaccccacc 2101 cctttttgta aatcttgttc attgtaaatc aaatacagcg tctttttcaa aaaaaaaaaa 2161 aaaaaa //