LOCUS BC004534 2270 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens splicing factor proline/glutamine-rich (polypyrimidine
tract binding protein associated), mRNA (cDNA clone IMAGE:3139130),
partial cds.
ACCESSION BC004534
VERSION BC004534.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2270)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2270)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 28, 2003 this sequence version replaced BC004534.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 4 Row: n Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..2270
/db_xref="H-InvDB:HIT000086391"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3139130"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2270
/gene="SFPQ"
/gene_synonym="POMP100"
/gene_synonym="PSF"
/db_xref="GeneID:6421"
/db_xref="MIM:605199"
CDS <1..1905
/gene="SFPQ"
/gene_synonym="POMP100"
/gene_synonym="PSF"
/codon_start=1
/product="SFPQ protein"
/protein_id="AAH04534.2"
/db_xref="GeneID:6421"
/db_xref="MIM:605199"
/translation="PQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGP
APGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVP
TTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKP
PHRGGGEPRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEK
TYTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAK
AELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDR
GRSTGKGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQ
KNPMYQKERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEM
EDAYHEHQANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIR
QREMEEQMRRQREESYSRMGYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGG
IGYEANPGVPPATMSGSMMGSDMRTERFGQGGAGPVGGQGPRGMGPGTPAGYGRGREE
YEGPNKKPRF"
BASE COUNT 615 a 551 c 605 g 499 t
ORIGIN
1 ccgcagcagc caccgccgca gcagccgcca ccgcatcagc cgccgccgca tccacagccg
61 catcagcagc agcagccgcc gccaccgccg caggactctt ccaagcccgt cgttgctcag
121 ggacccggcc ccgctcccgg agtaggcagc gcaccaccag cctccagctc ggccccgccc
181 gccactccac caacctcggg ggccccgcca gggtccgggc caggcccgac tccgaccccg
241 ccgcctgcag tcacctcggc ccctcccggg gcgccgccac ccaccccgcc aagcagcggg
301 gtccctacca cacctcctca ggccggaggc ccgccgcctc cgcccgcggc agtcccgggc
361 ccgggtccag ggcctaagca gggcccaggt ccgggtggtc ccaaaggcgg caaaatgcct
421 ggcgggccga agccaggtgg cggcccgggc ctaagtacgc ctggcggcca ccccaagccg
481 ccgcatcgag gcggcgggga gccccgcggg ggccgccagc accacccgcc ctaccaccag
541 cagcatcacc aggggccccc gcccggcggg cccggcggcc gcagcgagga gaagatctcg
601 gactcggagg ggtttaaagc caatttgtct ctcttgagga ggcctggaga gaaaacttac
661 acacagcgat gtcggttgtt tgttgggaat ctacctgctg atatcacgga ggatgaattc
721 aaaagactat ttgctaaata tggagaacca ggagaagttt ttatcaacaa aggcaaagga
781 ttcggattta ttaagcttga atctagagct ttggctgaaa ttgccaaagc cgaactggat
841 gatacaccca tgagaggtag acagcttcga gttcgctttg ccacacatgc tgctgccctt
901 tctgttcgta atctttcacc ttatgtttcc aatgaactgt tggaagaagc ctttagccaa
961 tttggtccta ttgaaagggc tgttgtaata gtggatgatc gtggaagatc tacagggaaa
1021 ggcattgttg aatttgcttc taagccagca gcaagaaagg catttgaacg atgcagtgaa
1081 ggtgttttct tactgacgac aactcctcgt ccagtcattg tggaaccact tgaacaacta
1141 gatgatgaag atggtcttcc tgaaaaactt gcccagaaga atccaatgta tcaaaaggag
1201 agagaaaccc ctcctcgttt tgcccagcat ggcacgtttg agtacgaata ttctcagcga
1261 tggaagtctt tggatgaaat ggaaaaacag caaagggaac aagttgaaaa aaacatgaaa
1321 gatgcaaaag acaaattgga aagtgaaatg gaagatgcct atcatgaaca tcaggcaaat
1381 cttttgcgcc aagatctgat gagacgacag gaagaattaa gacgcatgga agaacttcac
1441 aatcaagaaa tgcagaaacg taaagaaatg caattgaggc aagaggagga acgacgtaga
1501 agagaggaag agatgatgat tcgtcaacgt gagatggaag aacaaatgag gcgccaaaga
1561 gaggaaagtt acagccgaat gggctacatg gatccacggg aaagagacat gcgaatgggt
1621 ggcggaggag caatgaacat gggagatccc tatggttcag gaggccagaa atttccacct
1681 ctaggaggtg gtggtggcat aggttatgaa gctaatcctg gcgttccacc agcaaccatg
1741 agtggttcca tgatgggaag tgacatgcgt actgagcgct ttgggcaggg aggtgcgggg
1801 cctgtgggtg gacagggtcc tagaggaatg gggcctggaa ctccagcagg atatggtaga
1861 gggagagaag agtacgaagg cccaaacaaa aaaccccgat tttagatgtg atatttaggc
1921 tttcattcca gtttgttttg tttttttgtt tagataccaa tcttttaaat tcttgcattt
1981 tagtaagaaa gctatctttt tatggatgtt agcagtttat tgacctaata tttgtaaatg
2041 gtctgtttgg gcaggtaaaa ttatgtaatg cagtgtttgg aacaggagaa tttttttttc
2101 ctttttattt ctttattttt tcttttttac tgtataatgt ccctcaagtt tatggcagtg
2161 taccttgtgc cactgaattt ccaaagtgta ccaatttttt tttttttact gtgcttcaaa
2221 taaatagaaa aatagttata atattgatct tcaaaaaaaa aaaaaaaaaa
//