LOCUS BC004446 1166 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens chromosome 20 open reading frame 24, mRNA (cDNA clone
MGC:4099 IMAGE:2819807), complete cds.
ACCESSION BC004446
VERSION BC004446.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1166)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1166)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: i Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41327697
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..1166
/db_xref="H-InvDB:HIT000031952"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4099 IMAGE:2819807"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1166
/gene="C20orf24"
/gene_synonym="PNAS-11"
/gene_synonym="RIP5"
/db_xref="GeneID:55969"
/db_xref="HGNC:HGNC:15870"
CDS 144..407
/gene="C20orf24"
/gene_synonym="PNAS-11"
/gene_synonym="RIP5"
/codon_start=1
/product="C20orf24 protein"
/protein_id="AAH04446.1"
/db_xref="GeneID:55969"
/db_xref="HGNC:HGNC:15870"
/translation="MSGGRRKEEPPQPQLANGALKVSVWSKVLRSDAAWEDKDEFLDV
IYWFRQIIAVVLGVIWGVLPLRGFLGIAGKGHCCSGAVCVCDD"
BASE COUNT 279 a 284 c 306 g 297 t
ORIGIN
1 aggttgtgag gaaccgcagc gcgccgcagg accgggccgc tgagcctgca gccgccccgc
61 gccgtgacct gcgaccctag accccgactc cctttggctc agcccgcgcg ccccaggccc
121 ggcccgggcg gcgcgacggg aggatgagcg gcgggcggcg gaaggaggag ccgcctcagc
181 cgcagctggc caacggggcc ctcaaagtct ccgtctggag taaggtgctg cggagcgacg
241 cggcctggga ggataaggat gaatttttag atgtgatcta ctggttccga cagatcattg
301 ctgtggtcct gggtgtcatt tggggagttt tgccattacg agggttcttg ggaatagcag
361 ggaaaggcca ttgctgctct ggagctgtgt gtgtgtgtga tgactaaagc aaagaagcag
421 ccctacagtg gcactcctgg gtctggtgca ccactcctca ggagcatctc agattctgcc
481 tgatcaatgc aggagtcctg tacctctact tcagcaatta cctacagatt gatgaggaag
541 aatatggtgg cacgtgggag ctcacgaagg aagggtttat gacctctttt gccttgttca
601 tggtcatttg gatcatcttt tacactgcca tccattatga ctgatggtgt acagctccca
661 agtgctccct atccagtcca aaggaccctc ttgattacag cacaggaact tgatcgttgg
721 ggaaccccag ccccttggaa cttggaagac ccgtgtttcc tggaccgcga atcagtgtgt
781 tgggcatcag tgttttctgc aagggttgtg acctgaaact ttttaaaaac cacccacctt
841 tggggaagca tttctgaatt tatccatcac caaccatttc ttcttggata ccatcaagta
901 acagctatta tttgccaagt ggagctgtca tttaatttga tgcacctctg gattcagatg
961 aaacattaaa ttgtcttcct cgattctcca tcgggtgtag agtttttaaa ctatcaatgg
1021 catttcaagt cttctgaaac agcatggctg tatgtgcgtg gtccatagca cagtacatgc
1081 agcatctaat aagagtttcc attgtagaat gttttcacat acttgaataa atcaaatctt
1141 taattgagaa aaaaaaaaaa aaaaaa
//