LOCUS BC004434 1648 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens splicing factor 3a, subunit 2, 66kDa, mRNA (cDNA clone
MGC:3975 IMAGE:2820900), complete cds.
ACCESSION BC004434
VERSION BC004434.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1648)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1648)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: m Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 54112114.
FEATURES Location/Qualifiers
source 1..1648
/db_xref="H-InvDB:HIT000031940"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3975 IMAGE:2820900"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1648
/gene="SF3A2"
/gene_synonym="PRP11"
/gene_synonym="PRPF11"
/gene_synonym="SAP62"
/gene_synonym="SF3a66"
/db_xref="GeneID:8175"
/db_xref="HGNC:HGNC:10766"
/db_xref="MIM:600796"
CDS 93..1487
/gene="SF3A2"
/gene_synonym="PRP11"
/gene_synonym="PRPF11"
/gene_synonym="SAP62"
/gene_synonym="SF3a66"
/codon_start=1
/product="splicing factor 3a, subunit 2, 66kDa"
/protein_id="AAH04434.1"
/db_xref="GeneID:8175"
/db_xref="HGNC:HGNC:10766"
/db_xref="MIM:600796"
/translation="MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDP
YFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKV
KVEVKKFVKIGRPGYKVTKQRDSEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIE
PPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKMEKPP
APPSLPAGPPGVKRPPPPLMNGLPPRPPLPESLPPPPPGGLPLPPMPPTGPAPSGPPG
PPQLPPPAPGVHPPAPVVHPPASGVHPPAPGVHPPAPGVHPPAPGVHPPTSGVHPPAP
GVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVHPQAPGVHPAAPAVHPQAPG
VHPPAPGMHPQAPGVHPQPPGVHPSAPGVHPQPPGVHPSNPGVHPPTPMPPMLRPPLP
SEGPGNIPPPPPTN"
BASE COUNT 331 a 649 c 434 g 234 t
ORIGIN
1 ccaggggcag gggctggggc gaaacgagga ggagataacg cggccttggg ctctggtgtc
61 tcccagtctg ctaaagccct aaggccatca ccatggactt ccagcatcgc cccgggggca
121 agaccgggag cgggggcgtg gcctcctcct ccgagagcaa ccgtgaccgc agggagcgcc
181 tccggcagct ggccctggag accatcgaca tcaacaagga cccgtacttc atgaagaacc
241 acctgggctc ctatgaatgc aaactctgcc tgacacttca caacaatgag gggagctacc
301 tggcacatac gcaggggaag aagcaccaga ccaacctggc ccggcgagca gccaaggagg
361 ccaaggaggc ccctgcccag cccgcgcctg agaaggtcaa ggtggaggtg aagaagtttg
421 tgaagatcgg ccgcccgggc tacaaagtga ccaagcagag agactcggag atgggccagc
481 agagcctcct cttccagatt gactaccctg agatcgccga gggcatcatg ccacgtcacc
541 gcttcatgtc tgcgtacgag cagaggatcg agcctccgga ccggcgctgg cagtacctgc
601 tcatggccgc cgagccctac gagaccattg ccttcaaggt gccgagcaga gagatcgaca
661 aggcggaggg caagttctgg acacactgga accgggagac caagcagttc ttcctccagt
721 tccactttaa gatggagaag cccccggctc cacccagcct ccctgctggc ccccctgggg
781 tgaagcggcc tccacccccg ctgatgaacg gtctgccccc tcggccaccg ctgcctgagt
841 ctttgccacc gcccccgcca ggaggcctgc ctctgccacc catgcccccc acagggcctg
901 cgccctcagg gcccccggga ccaccccagc tacccccgcc agctccaggg gtccaccccc
961 cggccccagt ggtgcatccc cctgcatctg gggtccatcc cccagctcct ggcgtccacc
1021 ccccagctcc tggcgtccat cccccagccc ctggggtcca cccaccaacc tctggggtcc
1081 accccccagc tcctggagtc caccctccag cccccggggt tcacccacca gcccccggag
1141 tccacccacc agcccctggg gttcacccac cagccccagg ggtccatcct cccccatcag
1201 cgggggttca cccccaggcc ccgggggtgc acccagcagc ccccgccgtt caccctcagg
1261 ccccaggggt gcacccacca gccccaggga tgcaccctca ggccccgggg gtccaccccc
1321 aacctcccgg ggtccatccg tcggctcctg gggtccaccc tcagcctccg ggagttcacc
1381 cctcaaatcc tggggtgcac cccccaactc ccatgccccc aatgctgagg cccccacttc
1441 cctccgaagg cccagggaac atacctcccc ctcccccaac caactgagaa gctgctccct
1501 cccccagcaa gcccagcgcc aggtgctctt gccttttccc actgagagaa ggctgctctt
1561 ttgtactgcc ccccgctcat taaacagcct cccccagccc tgagtgcact gatgtccgca
1621 aaaaaaaaaa aaaaaaaaaa aaaaaaaa
//