LOCUS BC004433 1689 bp mRNA linear HUM 04-AUG-2008
DEFINITION Homo sapiens ceroid-lipofuscinosis, neuronal 3, mRNA (cDNA clone
MGC:3974 IMAGE:2820893), complete cds.
ACCESSION BC004433
VERSION BC004433.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1689)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1689)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: o Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4502888.
FEATURES Location/Qualifiers
source 1..1689
/db_xref="H-InvDB:HIT000031939"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3974 IMAGE:2820893"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1689
/gene="CLN3"
/gene_synonym="BATTENIN"
/gene_synonym="JNCL"
/db_xref="GeneID:1201"
/db_xref="HGNC:HGNC:2074"
/db_xref="MIM:607042"
CDS 118..1434
/gene="CLN3"
/gene_synonym="BATTENIN"
/gene_synonym="JNCL"
/codon_start=1
/product="ceroid-lipofuscinosis, neuronal 3"
/protein_id="AAH04433.1"
/db_xref="GeneID:1201"
/db_xref="HGNC:HGNC:2074"
/db_xref="MIM:607042"
/translation="MGGCAGSRRRFSDSEGEETVPEPRLPLLDHQGAHWKNAVGFWLL
GLCNNFSYVVMLSAAHDILSHKRTSGNQSHVDPGPTPIPHNSSSRFDCNSVSTAAVLL
ADILPTLVIKLLAPLGLHLLPYSPRVLVSGICAAGSFVLVAFSHSVGTSLCGVVFASI
SSGLGEVTFLSLTAFYPRAVISWWSSGTGGAGLLGALSYLGLTQAGLSPQQTLLSMLG
IPALLLASYFLLLTSPEAQDPGGEEEAESAARQPLIRTEAPESKPGSSSSLSLRERWT
VFKGLLWYIVPLVVVYFAEYFINQGLFELLFFWNTSLSHAQQYRWYQMLYQAGVFASR
SSLRCCRIRFTWALALLQCLNLVFLLADVWFGFLPSIYLVFLIILYEGLLGGAAYVNT
FHNIALETSDEHREFAMAATCISDTLGISLSGLLALPLHDFLCQLS"
BASE COUNT 291 a 538 c 455 g 405 t
ORIGIN
1 acggcctctg catagtgcag aacattctgc tgctcttaaa gaccctcatc cctcccgtgg
61 gagccccctt tggacactct atgaccctgg accctcgggg gacctgaact tgatgcgatg
121 ggaggctgtg caggctcgcg gcggcgcttt tcggattccg agggggagga gaccgtcccg
181 gagccccggc tccctctgtt ggaccatcag ggcgcgcatt ggaagaacgc ggtgggcttc
241 tggctgctgg gcctttgcaa caacttctct tatgtggtga tgctgagtgc cgcccacgac
301 atccttagcc acaagaggac atcgggaaac cagagccatg tggacccagg cccaacgccg
361 atcccccaca acagctcatc acgatttgac tgcaactctg tctctacggc tgctgtgctc
421 ctggcggaca tcctccccac actcgtcatc aaattgttgg ctcctcttgg ccttcacctg
481 ctgccctaca gcccccgggt tctcgtcagt gggatttgtg ctgctggaag cttcgtcctg
541 gttgcctttt ctcattctgt ggggaccagc ctgtgtggtg tggtcttcgc tagcatctca
601 tcaggccttg gggaggtcac cttcctctcc ctcactgcct tctaccccag ggccgtgatc
661 tcctggtggt cctcagggac tgggggagct gggctgctgg gggccctgtc ctacctgggc
721 ctcacccagg ccggcctctc ccctcagcag accctgctgt ccatgctggg tatccctgcc
781 ctgctgctgg ccagctattt cttgttgctc acatctcctg aggcccagga ccctggaggg
841 gaagaagaag cagagagcgc agcccggcag cccctcataa gaaccgaggc cccggagtcg
901 aagccaggct ccagctccag cctctccctt cgggaaaggt ggacagtgtt caagggtctg
961 ctgtggtaca ttgttccctt ggtcgtagtt tactttgccg agtatttcat taaccaggga
1021 ctttttgaac tcctcttttt ctggaacact tccctgagtc acgctcagca ataccgctgg
1081 taccagatgc tgtaccaggc tggcgtcttt gcctcccgct cttctctccg ctgctgtcgc
1141 atccgtttca cctgggccct ggccctgctg cagtgcctca acctggtgtt cctgctggca
1201 gacgtgtggt tcggctttct gccaagcatc tacctcgtct tcctgatcat tctgtatgag
1261 gggctcctgg gaggcgcagc ctacgtgaac accttccaca acatcgccct ggagaccagt
1321 gatgagcacc gggagtttgc aatggcggcc acctgcatct ctgacacact ggggatctcc
1381 ctgtcggggc tcctggcttt gcctctgcat gacttcctct gccagctctc ctgatactcg
1441 ggatcctcag gacgcaggtc acattcacct gtgggcagag ggacaggtca gacacccagg
1501 cccaccccag agaccctcca tgaactgtgc tcccagcctt cccggcaggt ctgggagtag
1561 ggaagggctt aagccttgtt tcccttgcag gggggccagc cattgtctcc cacttgggga
1621 gtttcttcct ggcatcatgc cttctgaata aatgccgatt ttatccatgg aaaaaaaaaa
1681 aaaaaaaaa
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