LOCUS BC004418 1721 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens synaptosomal-associated protein, 47kDa, mRNA (cDNA
clone IMAGE:3659680), partial cds.
ACCESSION BC004418
VERSION BC004418.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1721)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1721)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 13 Row: b Column: 24.
FEATURES Location/Qualifiers
source 1..1721
/db_xref="H-InvDB:HIT000086363"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3659680"
/tissue_type="Ovary, adenocarcinoma"
/clone_lib="NIH_MGC_9"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1721
/gene="SNAP47"
/gene_synonym="HEL170"
/gene_synonym="SNAP-47"
/gene_synonym="SVAP1"
/db_xref="GeneID:116841"
/db_xref="HGNC:HGNC:30669"
CDS <1..1139
/gene="SNAP47"
/gene_synonym="HEL170"
/gene_synonym="SNAP-47"
/gene_synonym="SVAP1"
/codon_start=3
/product="SNAP47 protein"
/protein_id="AAH04418.1"
/db_xref="GeneID:116841"
/db_xref="HGNC:HGNC:30669"
/translation="GEILVSFPLSSIVEIKKEASHFIFSSITILEKGHAKHWFSSLRP
SRNVVFSIIEHFWRELLLSQPGAVADASVPRTRGEELTGLMAGSQKRLEDTARVLHHQ
GQQLDSVMRGLDKMESDLEVADRLLTELESPAWWPFSSKLWKTPPETKPREDVSMTSC
EPFGKEGILIKIPAVISHRTESHVKPGRLTVLVSGLEIHDSSSLLMHRFEREDVDDIK
VHSPYEISIRQRFIGKPDMAYRLISAKMPEVIPILEVQFSKKMELLEDALVLRSARTS
SPAEKSCSVWHAASGLMGRTLHREPPAGDQEGTALHLQTSLPALSEADTQELTQILRR
MKGLALEAESELERQDEALDGVAAAVDRATLTIDKHNRRMKRLT"
BASE COUNT 426 a 457 c 480 g 358 t
ORIGIN
1 ctggagagat tctggtcagc ttccccctct ccagcatagt tgagatcaag aaggaggctt
61 cacattttat cttcagctcc atcaccatcc tggagaaggg ccatgccaag cactggttca
121 gctccctgcg gccaagtcga aatgtggtct tcagcatcat cgagcatttc tggagggagc
181 tgctgctgtc tcagcctgga gccgtggcag acgcatctgt cccaaggacc cggggcgagg
241 agctgacggg actcatggct ggatcccaga aacgcctgga ggacacggcg agggtcctgc
301 accaccaggg ccagcagctg gacagcgtca tgagaggcct ggacaagatg gagtcagacc
361 tggaggtggc ggacagattg ctgacagaac tggaatctcc tgcttggtgg ccctttagct
421 ccaagctttg gaagacacca ccggaaacaa agcccaggga agatgtctcc atgaccagtt
481 gtgaaccctt tgggaaagaa gggatactga taaaaattcc tgctgttatt tcccacagaa
541 cagagtctca cgttaaacca gggaggctca ccgtccttgt gtctgggttg gaaatacatg
601 actccagttc tttgctcatg cacaggtttg aaagagaaga cgtggacgac atcaaggtcc
661 actcacctta cgaaattagc atccgccagc ggtttattgg aaagccagac atggcctatc
721 gtttgatatc tgccaagatg ccagaggtta tccccatttt agaagtgcag ttcagcaaga
781 agatggagct gttagaagat gcattggtgc tcagaagcgc aagaacctct tcccccgcag
841 agaagagctg ctcagtctgg catgcagcat ctgggctgat gggccgtacc ctgcaccgtg
901 agccacccgc aggagaccag gagggcacag cactgcacct gcagacaagc ctgccagccc
961 tttctgaggc agatacccag gaactaaccc agatcctgag gaggatgaag gggctggccc
1021 tggaggccga gagtgagctg gagagacaag acgaagccct ggatggcgtt gcagcagctg
1081 tggacagggc aaccttgacc atcgacaagc acaacaggcg gatgaagagg ctgacctagg
1141 ggcagaacgt ccctgcattc ctgtctcacc ctgcacatcc cgctgagatg gagggctggg
1201 cggcagtgcc agggctgcag aggcctgtgg ccctccggag tggtcttcct ctggatgggg
1261 ctgctactgt ggggctgctt ctgcaccagg ggcctcccca ggtgtgcacc atgcctgcct
1321 cccacttggc tgtccctgct gctgggcagg acccggccac atgttctgcg gatgctgcag
1381 aagtgtggac catggcggga ccccaaggac acttggcaca ggcctggaag aggccgccct
1441 cgtcttgtct cggctccctt tcatggacag actggccttc ttagctgtac tataaatttg
1501 tgagtgaagt tagagcccag ctcacttagc cagctcactt tgagggcatc ctataaacac
1561 ccaactgttc ttttatcgtc tcggttttag ccaaaagtga aattagcatg actgcatctt
1621 tcaaacaaaa atattgattt ctgcttttag ggccccgttt ccatccagaa ataaagggaa
1681 atgctggctt caaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
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