LOCUS BC004379 1299 bp mRNA linear HUM 12-NOV-2007
DEFINITION Homo sapiens gap junction protein, beta 5, 31.1kDa, mRNA (cDNA
clone MGC:10657 IMAGE:3639452), complete cds.
ACCESSION BC004379
VERSION BC004379.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1299)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1299)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 13 Row: d Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31542847.
FEATURES Location/Qualifiers
source 1..1299
/db_xref="H-InvDB:HIT000031904"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10657 IMAGE:3639452"
/tissue_type="Pancreas, adenocarcinoma"
/clone_lib="NIH_MGC_39"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1299
/gene="GJB5"
/gene_synonym="CX31.1"
/db_xref="GeneID:2709"
/db_xref="HGNC:HGNC:4287"
/db_xref="MIM:604493"
CDS 101..922
/gene="GJB5"
/gene_synonym="CX31.1"
/codon_start=1
/product="gap junction protein, beta 5, 31.1kDa"
/protein_id="AAH04379.1"
/db_xref="GeneID:2709"
/db_xref="HGNC:HGNC:4287"
/db_xref="MIM:604493"
/translation="MNWSIFEGLLSGVNKYSTAFGRIWLSLVFIFRVLVYLVTAERVW
SDDHKDFDCNTRQPGCSNVCFDEFFPVSHVRLWALQLILVTCPSLLVVMHVAYREVQE
KRHREAHGENSGRLYLNPGKKRGGLWWTYVCSLVFKASVDIAFLYVFHSFYPKYILPP
VVKCHADPCPNIVDCFISKPSEKNIFTLFMVATAAICILLNLVELIYLVSKRCHECLA
ARKAQAMCTGHHPHGTTSSCKQDDLLSGDLIFLGSDSHPPLLPDRPRDHVKKTIL"
BASE COUNT 284 a 369 c 356 g 290 t
ORIGIN
1 atgaaattca agctgcttgc tgagtcctat tgccggctgc tgggagccag gagagccctg
61 aggagtagtc actcagtagc agctgacgcg tgggtccacc atgaactgga gtatctttga
121 gggactcctg agtggggtca acaagtactc cacagccttt gggcgcatct ggctgtctct
181 ggtcttcatc ttccgcgtgc tggtgtacct ggtgacggcc gagcgtgtgt ggagtgatga
241 ccacaaggac ttcgactgca atactcgcca gcccggctgc tccaacgtct gctttgatga
301 gttcttccct gtgtcccatg tgcgcctctg ggccctgcag cttatcctgg tgacatgccc
361 ctcactgctc gtggtcatgc acgtggccta ccgggaggtt caggagaaga ggcaccgaga
421 agcccatggg gagaacagtg ggcgcctcta cctgaacccc ggcaagaagc ggggtgggct
481 ctggtggaca tatgtctgca gcctagtgtt caaggcgagc gtggacatcg cctttctcta
541 tgtgttccac tcattctacc ccaaatatat cctccctcct gtggtcaagt gccacgcaga
601 tccatgtccc aatatagtgg actgcttcat ctccaagccc tcagagaaga acattttcac
661 cctcttcatg gtggccacag ctgccatctg catcctgctc aacctcgtgg agctcatcta
721 cctggtgagc aagagatgcc acgagtgcct ggcagcaagg aaagctcaag ccatgtgcac
781 aggtcatcac ccccacggta ccacctcttc ctgcaaacaa gacgacctcc tttcgggtga
841 cctcatcttt ctgggctcag acagtcatcc tcctctctta ccagaccgcc cccgagacca
901 tgtgaagaaa accatcttgt gaggggctgc ctggactggt ctggcaggtt gggcctggat
961 ggggaggctc tagcatctct cataggtgca acctgagagt gggggagcta agccatgagg
1021 taggggcagg caagagagag gattcagacg ctctgggagc cagttcctag tcctcaactc
1081 cagccacctg ccccagctcg acggcactgg gccagttccc cctctgctct gcagctcggt
1141 ttccttttct agaatggaaa tagtgagggc caatgcccag ggttggaggg aggagggcgt
1201 tcatagaaga acacacatgc gggcaccttc atcgtgtgtg gcccactgtc agaacttaat
1261 aaaagtcaac tcatttgctg gaaaaaaaaa aaaaaaaaa
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