LOCUS BC004356 1122 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens peroxisomal biogenesis factor 16, mRNA (cDNA clone
MGC:3607 IMAGE:2822311), complete cds.
ACCESSION BC004356
VERSION BC004356.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1122)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1122)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: n Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4758897.
FEATURES Location/Qualifiers
source 1..1122
/db_xref="H-InvDB:HIT000031883"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3607 IMAGE:2822311"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1122
/gene="PEX16"
/db_xref="GeneID:9409"
/db_xref="HGNC:HGNC:8857"
/db_xref="MIM:603360"
CDS 11..1021
/gene="PEX16"
/codon_start=1
/product="peroxisomal biogenesis factor 16"
/protein_id="AAH04356.1"
/db_xref="GeneID:9409"
/db_xref="HGNC:HGNC:8857"
/db_xref="MIM:603360"
/translation="MEKLRLLGLRYQEYVTRHPAATAQLETAVRGFSYLLAGRFADSH
ELSELVYSASNLLVLLNDGILRKELRKKLPVSLSQQKLLTWLSVLECVEVFMEMGAAK
VWGEVGRWLVIALIQLAKAVLRMLLLLWFKAGLQTSPPIVPLDRETQAQPPDGDHSPG
NHEQSYVGKRSNRVVRTLQNTPSLHSRHWGAPQQREGRQQQHHEELSATPTPLGLQET
IAEFLYIARPLLHLLSLGLWGQRSWKPWLLAGVVDVTSLSLLSDRKGLTRRERRELRR
RTILLLYYLLRSPFYDRFSEARILFLLQLLADHVPGVGLVTRPLMDYLPTWQKIYFYS
WG"
BASE COUNT 217 a 337 c 357 g 211 t
ORIGIN
1 cgagggcagg atggagaagc tgcggctcct gggcctccgc taccaggagt acgtgactcg
61 tcacccggcc gccacggccc agctggagac agcagtgcgg ggcttcagtt acctgctggc
121 aggtcgattc gccgattcgc acgagctgtc agagctggtg tactctgcct ctaacctgct
181 tgtgctgctc aatgacggga tcctacggaa ggagcttcgg aaaaagttgc ctgtgtcgct
241 gtcccagcag aagctgctga catggctgag cgtgctggag tgcgtggagg tgttcatgga
301 gatgggagct gccaaggtgt ggggtgaagt gggccgctgg cttgtcatcg ccctcatcca
361 gctggccaag gctgtactgc ggatgctcct gctgctctgg ttcaaggctg gcctccagac
421 ttcaccccct atcgttccac tggacagaga gacccaggca cagcccccgg atggtgacca
481 cagccctggc aaccatgagc agtcctacgt ggggaagcgg tcaaaccggg tggtgcgaac
541 cctccagaac acgccgtccc tgcactccag gcactgggga gctccccagc agcgggaggg
601 acggcagcag cagcatcacg aggagctgag tgcgaccccc acccccctgg ggctgcagga
661 gaccatcgca gagtttttgt acattgcccg gccgctgctg cacttgctca gcctgggcct
721 gtggggtcag aggtcgtgga aaccctggct cttggctggt gttgtggacg tgaccagcct
781 gagcctcctg agtgacagaa agggcctgac ccggagggag cggcgggagc tgcggcgccg
841 gaccatcctg ctgctctact acctgctgcg ctctcctttc tacgaccgct tctccgaggc
901 caggatcctc ttcctgctcc agttgctggc cgaccacgtc cctggcgttg gcctggtcac
961 aaggccgctc atggattact tgcccacctg gcagaaaatc tacttctaca gttggggctg
1021 acagacctcc cggaaggagg gtgtggggag gggtggggca gggagcccct cttccctaat
1081 aaaactgact ccggcagcga aaaaaaaaaa aaaaaaaaaa aa
//