LOCUS BC004331 3003 bp mRNA linear HUM 13-DEC-2004
DEFINITION Homo sapiens hydroxysteroid dehydrogenase like 2, mRNA (cDNA clone
MGC:10940 IMAGE:3630835), complete cds.
ACCESSION BC004331
VERSION BC004331.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3003)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3003)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 13 Row: o Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40254985.
FEATURES Location/Qualifiers
source 1..3003
/db_xref="H-InvDB:HIT000031867"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10940 IMAGE:3630835"
/tissue_type="Uterus, endometrium adenocarcinoma"
/clone_lib="NIH_MGC_44"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3003
/gene="HSDL2"
/gene_synonym="C9orf99"
/gene_synonym="MGC10940"
/db_xref="GeneID:84263"
CDS 85..1122
/gene="HSDL2"
/gene_synonym="C9orf99"
/gene_synonym="MGC10940"
/codon_start=1
/product="HSDL2 protein"
/protein_id="AAH04331.1"
/db_xref="GeneID:84263"
/translation="MLPNTGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTA
QPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEKAIKKFGAYTIAKYGM
SMYVLGMAEEFKGEIAVNALWPKTAIHTAAMDMLGGPGIESQCRKVDIIADAAYSIFQ
KPKSFTGNFVIDENILKEEGIENFDVYAIKPGHPLQPDFFLDEYPEAVSKKVESTGAV
PEFKEEKLQLQPKPRSGAVEETFRIVKDSLSDDVVKATQAIYLFELSGEDGGTWFLDL
KSKGGNVGYGEPSDQADVVMSMTTDDFVKMFSGKLKPTMAFMSGKLKIKGNMALAIKL
EKLMNQMNARL"
BASE COUNT 983 a 537 c 623 g 860 t
ORIGIN
1 gataaatgcg gagggacggt ccagctttag ctctctgctc gccgccgccg ctgtcgccgc
61 cacctcctct gatctacgaa agtcatgtta cccaacaccg ggaggctggc aggatgtaca
121 gtttttatca caggtgcaag ccgtggcatt ggcaaagcta ttgcattgaa agcagcaaag
181 gatggagcaa atattgttat tgctgcaaag accgcccagc cacatccaaa acttctaggc
241 acaatctata ctgctgctga agaaattgaa gcagttggag gaaaggcctt gccatgtatt
301 gttgatgtga gagatgaaca gcagatcagt gctgcagtgg agaaagccat caagaaattt
361 ggagcttata ccattgctaa gtatggtatg tctatgtatg tgcttggaat ggcagaagaa
421 tttaaaggtg aaattgcagt caatgcatta tggcctaaaa cagccataca cactgctgct
481 atggatatgc tgggaggacc tggtatcgaa agccagtgta gaaaagttga tatcattgca
541 gatgcagcat attccatttt ccaaaagcca aaaagtttta ctggcaactt tgtcattgat
601 gaaaatatct taaaagaaga aggaatagaa aattttgacg tttatgcaat taaaccaggt
661 catcctttgc aaccagattt cttcttagat gaatacccag aagcagttag caagaaagtg
721 gaatcaactg gtgctgttcc agaattcaaa gaagagaaac tgcagctgca accaaaacca
781 cgttctggag ctgtggaaga aacatttaga attgttaagg actctctcag tgatgatgtt
841 gttaaagcca ctcaagcaat ctatctgttt gaactctccg gtgaagatgg tggcacgtgg
901 tttcttgatc tgaaaagcaa gggtgggaat gtcggatatg gagagccttc tgatcaggca
961 gatgtggtga tgagtatgac tactgatgac tttgtaaaaa tgttttcagg gaaactaaaa
1021 ccaacaatgg cattcatgtc agggaaattg aagattaaag gtaacatggc cctagcaatc
1081 aaattggaga agctaatgaa tcagatgaat gccagactgt gaaggaaaat ataaaaaaaa
1141 agtcgactgc tatgctcaaa aagtaaaaaa agctcaacag ttaaaatcta atgtttgttt
1201 tctttcctgt tatattataa ggatatgcac gtttgttctg gaaaagatag aatttgtctc
1261 taaaagactt gaaattgtaa ttaaaatggc aagctaatca aacataagct tcattaagtg
1321 ggattctaag acagtctgtg tttttatatt tcaagggttt aaccctttga gccttacatc
1381 tcattcactg tctttctcca agaaaagtat tttgggcgga cagtcagatc aagcagtaaa
1441 attagctctt tcaaatcttc ttgtcatgta aaatgaagct agtctgtttt aaaattttta
1501 gttttggatt gtatactaat gaaaatctta atgatgtttt tgatttttat atacttattt
1561 taaagaaaat cttatatagt acattttaca aaaattataa aaaatgaatt agtactggcg
1621 aggactaaat gaaacaataa tttttcattt tgataactag ctttccaggt ggacttagcc
1681 ataggaaaat attactaatg taatttaaca aattgctgca tgtattccat ttaaaaatat
1741 gtttaaattg tcctaaaaca aaataatttt ctccctagga gtatgcattt ggctacagtg
1801 ttttgaaaca gaaaccttag aataggtcat tggtatgggc tgaactgtgt atcccccaat
1861 tcatttgttg aggtcctaac tcccatttct tttgaatgtg actgttcgga gatgaggcct
1921 ttaaagaggt gacttaagtt caaaggaggc tgttagtcta atccaacatg gtgtcctttg
1981 gacataagag ataccagcaa tgtgtgcaca gaacaaagac caggagagga cacagtgaga
2041 aggcagttat ctgcaagcaa agagagaggc ttcagaagaa acaaaatcac cagcaccttg
2101 atctttgact tctaatctcc agaatagtga gaaataaatt tctgttgtta agccgtccac
2161 tgtgggaggc cgacgcagga ggattgcttg aggccaggag ttcaaggcca gcctggacaa
2221 catagtaaga ccctatctct acccccctaa taaattaatt taaaaagccc cccaatctgt
2281 ggtattttat tatggcagcc ctagcaagct aatacagtgg tttgagaggc tgggagggtt
2341 gaggggaaga taaactttta aaaagctctt atctttcatt tcaatcagtt aaaaatactt
2401 gctcagtgta acaattttgc ttctcagctt ccactctaat attgttgtgc cattaagcaa
2461 tttagctaat cctgacattt cttagattca taatgttagg agcatttaat ctgtatttta
2521 caagttagga agcagaggat cagagatggg aaaggactag cccaaggcca acattaacaa
2581 gccctctaac aaaaacttta caatacattt atgttgaatg gaactccaag atctcacctc
2641 tccatccagg aatggagtcc atgtaatcaa agtgaactta aaaataggac agtttcaaca
2701 agtcaggaga ttcacagcaa ctgatcaaag ggagtccagt caacgtgagc aagcgtgatt
2761 atgatgagga agccccctct gctttaatcc acacaaggaa cgtaacctga agtaacctga
2821 tgttaaccaa tctgctgtgt ctactatgct gtttccttgt tcctgctagt gctgctttac
2881 aaatgcagac cattctatca tacctggcag ggcttctgtt ttattttgta ggctggatgc
2941 tacccagttc atgaatcgct aataaaagcc aattagatct ttaaaaaaaa aaaaaaaaaa
3001 aaa
//