LOCUS BC004291 2950 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens synaptotagmin XI, mRNA (cDNA clone MGC:10881
IMAGE:3621175), complete cds.
ACCESSION BC004291
VERSION BC004291.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2950)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2950)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 13 Row: j Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..2950
/db_xref="H-InvDB:HIT000031847"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10881 IMAGE:3621175"
/tissue_type="Lymph, Burkitt lymphoma"
/clone_lib="NIH_MGC_8"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2950
/gene="SYT11"
/gene_synonym="KIAA0080"
/gene_synonym="MGC10881"
/gene_synonym="MGC17226"
/gene_synonym="SYT12"
/db_xref="GeneID:23208"
/db_xref="HGNC:HGNC:19239"
/db_xref="MIM:608741"
CDS 184..1479
/gene="SYT11"
/gene_synonym="KIAA0080"
/gene_synonym="MGC10881"
/gene_synonym="MGC17226"
/gene_synonym="SYT12"
/codon_start=1
/product="synaptotagmin XI"
/protein_id="AAH04291.1"
/db_xref="GeneID:23208"
/db_xref="HGNC:HGNC:19239"
/db_xref="MIM:608741"
/translation="MAEITNIRPSFDVSPVVAGLIGASVLVVCVSVTVFVWSCCHQQA
EKKHKNPPYKFIHMLKGISIYPETLSNKKKIIKVRRDKDGPGREGGRRNLLVDAAEAG
LLSRDKDPRGPSSGSCIDQLPIKMDYGEELRSPITSLTPGESKTTSPSSPEEDVMLGS
LTFSVDYNFPKKALVVTIQEAHGLPVMDDQTQGSDPYIKMTILPDKRHRVKTRVLRKT
LDPVFDETFTFYGIPYSQLQDLVLHFLVLSFDRFSRDDVIGEVMVPLAGVDPSTGKVQ
LTRDIIKRNIQKCISRGELQVSLSYQPVAQRMTVVVLKARHLPKMDITGLSGNPYVKV
NVYYGRKRIAKKKTHVKKCTLNPIFNESFIYDIPTDLLPDISIEFLVIDFDRTTKNEV
VGRLILGAHSVTASGAEHWREVCESPRKPVAKWHSLSEY"
BASE COUNT 790 a 708 c 704 g 748 t
ORIGIN
1 gagcatctta agagctgagc gcagctgaca actaggggcc ggaccgtcgc aggaggcgtc
61 cgctggatac cttccccctt ccctgaccta gagctctaca gctgctgcct cggtactgac
121 cgagggttcc cagagctgtc ttaccattgc aaaaacgtta tagcaacagc ctctgattac
181 gacatggctg agatcaccaa tatccgacct agctttgatg tgtcaccggt ggtggccggc
241 ctcatcgggg cctctgtgct ggtggtgtgt gtctcggtga ccgtctttgt ctggtcatgc
301 tgccaccagc aggcagagaa gaagcacaag aacccaccat acaagtttat tcacatgctc
361 aaaggcatca gcatataccc agagaccctc agcaacaaga agaaaatcat caaagtgcgg
421 agagacaaag atggtcctgg gagggaaggt ggacgtagga acctgttggt ggacgcagca
481 gaggctggcc tgctaagccg agacaaagat cccagggggc ctagctctgg atcttgtata
541 gaccaattac ccatcaaaat ggactatggg gaagaactaa ggagccctat tacaagcctg
601 acccctgggg agagcaaaac cacctctcca tcatctccag aggaggatgt catgctagga
661 tccctcacct tctcagtgga ctataacttc ccgaaaaaag ccctggtggt gacaatccag
721 gaggcccacg ggctgccagt gatggatgac cagacccagg gatctgaccc ctacatcaaa
781 atgaccatcc ttcctgacaa acggcatcgg gtgaagacca gagtgctgcg gaagaccctg
841 gaccctgtgt ttgacgagac cttcaccttc tatggcatcc cctacagcca gctgcaggac
901 ctggtgctgc acttccttgt cctcagcttt gaccgcttct ctcgggatga tgtcattggc
961 gaggtcatgg tgccactggc aggggtggac cccagcacag gcaaggtaca actgaccagg
1021 gacatcatca aaaggaatat ccagaagtgc atcagcagag gggagctcca ggtgtctctg
1081 tcatatcagc ctgtggcaca gagaatgaca gtggtggtcc tcaaagccag acacttgccg
1141 aagatggata tcaccggtct ctcaggtaat ccttatgtca aggtgaacgt ctactacggc
1201 agaaagcgca ttgccaagaa gaaaacccat gtgaagaagt gcactttgaa ccccatcttc
1261 aatgaatctt tcatctacga catccccact gacctcctgc ctgatatcag catcgagttc
1321 ctcgttatcg acttcgatcg caccaccaag aatgaggtgg tggggaggct gatcctgggg
1381 gcacacagtg tcacagccag tggtgctgaa cactggagag aggtctgcga gagcccccgc
1441 aagcctgtgg ccaagtggca cagtctgagc gagtactaat cctgttcttc tctcctctaa
1501 tccccggggg ccaagctggg gagggatgtg gaggggaaaa agatgacaga gaagtggact
1561 ccaaacctca ttttagttgt agaagaaaat ttcttacaaa acaaattcca caaagaacac
1621 cctatatgac cacagctgca gatcagttct tagcaatgat gttttttttt ctgctttgca
1681 aggcgctaga atcttttatt ttactttatt ttttttgagg tggagtttcg ctcttgttgc
1741 ccgggctgga gtgcaatggt gagatctcaa ctcactgcaa cctctgccct ccaggttcaa
1801 gtgattctcc tccctcagcc tcccaagtag ctgggattac aggcacccac gagcatgccc
1861 ggctaatttt ttgtattttc agtagagatg ggtttcacca tgttggccag gctggtctcg
1921 aattccagac ctcaggtgat ccacccgcct cggcctccca aagtgctggg attacaggtg
1981 cgagccaccg tgcccggcct ctggttttgt tttgtttttt ttttttaatg ggggacaaaa
2041 gagagggaaa gacccctata aatctatata taacaatgta accatatact tgcatgtcta
2101 atacaaactg aagaaattag cctaactgcc aatatcaagt tgcagatttt aatccatgga
2161 aattgtgttt tgtgctgaat tgtatttgct gattacctga aattggcttc tttttattgg
2221 gcttctctgg agaatttctc ccactcccca cctctgcaga agaaaatttt gctcttataa
2281 aacctcatgt tttcatcatt cccatctttt ctttttattg cctcttatat ctctgctctt
2341 tgacctcaag gtctagaggt ctgcagtaag ccaagaaaca aaggtggggt ggatgaggca
2401 aggtttgcag gagaaagagg aattgagaaa tggggtattt ttgctatcag ctcttctgct
2461 atgaagtagt aaaaggcagt ctataattaa ctgacagacc taactgaagc acagagaata
2521 catcagactt atgcatccaa gacatcagaa cttggatttt atcaaacttg atgacttctc
2581 taaaaggagc tttggaaact tcaaattcag ctataggata gtaccaatga acacatccag
2641 ctgatcccaa aagctgtttt caggtataag gacaaggaga ggagacaagt gacgacagcc
2701 attccccttt gcagctatct actgtagtga cagccatttc ttggttgatg ggttggaagt
2761 catcagaggt ttgaagaatt acactggcct ttgtttttct ggaaatgccg accatggaga
2821 tgctttagag tcttctcaaa tagcttagat gttgtaatga ggttagcttt gcttcataaa
2881 acaggggccc tcagaagttc tccttaaatt tttcaataaa aatttagctc ttaaaaaaaa
2941 aaaaaaaaaa
//