LOCUS BC004244 2422 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens biglycan, mRNA (cDNA clone MGC:10461 IMAGE:3503374),
complete cds.
ACCESSION BC004244
VERSION BC004244.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2422)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2422)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 13 Row: c Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34304351.
FEATURES Location/Qualifiers
source 1..2422
/db_xref="H-InvDB:HIT000031811"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10461 IMAGE:3503374"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2422
/gene="BGN"
/gene_synonym="DSPG1"
/gene_synonym="PG-S1"
/gene_synonym="PGI"
/gene_synonym="SLRR1A"
/db_xref="GeneID:633"
/db_xref="HGNC:HGNC:1044"
/db_xref="MIM:301870"
CDS 140..1246
/gene="BGN"
/gene_synonym="DSPG1"
/gene_synonym="PG-S1"
/gene_synonym="PGI"
/gene_synonym="SLRR1A"
/codon_start=1
/product="biglycan"
/protein_id="AAH04244.1"
/db_xref="GeneID:633"
/db_xref="HGNC:HGNC:1044"
/db_xref="MIM:301870"
/translation="MWPLWRLVSLLALSQALPFEQRGFWDFTLDDGPFMMNDEEASGA
DTSGVLDPDSVTPTYSAMCPFGCHCHLRVVQCSDLGLKSVPKEISPDTTLLDLQNNDI
SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSS
LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA
KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL
PTLRELHLDNNKLARVPSGLPDLKLLQVVYLHSNNITKVGVNDFCPMGFGVKRAYYNG
ISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK"
BASE COUNT 512 a 842 c 590 g 478 t
ORIGIN
1 aattcggcat gaggggagtg agtagctgct ttcggtccgc cggacacacc ggacagatag
61 acgtgcggac ggcccaccac cccagccctc caactagtca gcctgcgcct ggcgcctccc
121 ctctccaggt ccatccgcca tgtggcccct gtggcgcctc gtgtctctgc tggccctgag
181 ccaggccctg ccctttgagc agagaggctt ctgggacttc accctggacg atgggccatt
241 catgatgaac gatgaggaag cttcgggcgc tgacacctca ggcgtcctgg acccggactc
301 tgtcacaccc acctacagcg ccatgtgtcc tttcggctgc cactgccacc tgcgggtggt
361 tcagtgctcc gacctgggtc tgaagtctgt gcccaaagag atctcccctg acaccacgct
421 gctggacctg cagaacaacg acatctccga gctccgcaag gatgacttca agggtctcca
481 gcacctctac gccctcgtcc tggtgaacaa caagatctcc aagatccatg agaaggcctt
541 cagcccactg cggaagctgc agaagctcta catctccaag aaccacctgg tggagatccc
601 gcccaaccta cccagctccc tggtggagct ccgcatccac gacaaccgca tccgcaaggt
661 gcccaaggga gtgttcagcg ggctccggaa catgaactgc atcgagatgg gcgggaaccc
721 actggagaac agtggctttg aacctggagc cttcgatggc ctgaagctca actacctgcg
781 catctcagag gccaagctga ctggcatccc caaagacctc cctgagaccc tgaatgaact
841 ccacctagac cacaacaaaa tccaggccat cgaactggag gacctgcttc gctactccaa
901 gctgtacagg ctgggcctag gccacaacca gatcaggatg atcgagaacg ggagcctgag
961 cttcctgccc accctccggg agctccactt ggacaacaac aagttggcca gggtgccctc
1021 agggctccca gacctcaagc tcctccaggt ggtctatctg cactccaaca acatcaccaa
1081 agtgggtgtc aacgacttct gtcccatggg cttcggggtg aagcgggcct actacaacgg
1141 catcagcctc ttcaacaacc ccgtgcccta ctgggaggtg cagccggcca ctttccgctg
1201 cgtcactgac cgcctggcca tccagtttgg caactacaaa aagtagaggc agctgcagcc
1261 accgcggggc ctcagtgggg gtctctgggg aacacagcca gacatcctga tggggaggca
1321 gagccaggaa gctaagccag ggcccagctg cgtccaaccc agccccccac ctcgggtccc
1381 tgaccccagc tcgatgcccc atcaccgcct ctccctggct cccaagggtg caggtgggcg
1441 caaggcccgg cccccatcac atgttccctt ggcctcagag ctgcccctgc tctcccacca
1501 cagccaccca gaggcacccc atgaagcttt tttctcgttc actcccaaac ccaagtgtcc
1561 aaggctccag tcctaggaga acagtccctg ggtcagcagc caggaggcgg tccataagaa
1621 tggggacagt gggctctgcc agggctgccg cacctgtcca gacacacatg ttctgttcct
1681 cctcctcatg catttccagc ctttcaaccc tccccgactc tgcggctccc ctcagccccc
1741 ttgcaagttc atggcctgtc cctcccagac ccctgctcca ctggcccttc gaccagtcct
1801 cccttctgtt ctctctttcc ccgtccttcc tctctctctc tctctctctc tctctctctt
1861 tctgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tcttgtgctt cctcagacct
1921 ttctcgcttc tgagcttggt ggcctgttcc ctccatctct ccgaacctgg cttcgcctgt
1981 ccctttcact ccacaccctc tggccttctg ccttgagctg ggactgcttt ctgtctgtcc
2041 ggcctgcacc cagcccctgc ccacaaaacc ccagggacag cggtctcccc agcctgccct
2101 gctcaggcct tgcccccaaa cctgtactgt cccggaggag gttgggaggt ggaggcccag
2161 catcccgcgc agatgacacc atcaaccgcc agagtcccag acaccggttt tcctagaagc
2221 ccctcacccc cactggccca ctggtggcta ggtctcccct tatccttctg gtccagcgca
2281 aggaggggct gcttctgagg tcggtggctg tctttccatt aaagaaacac cgtgcaacgt
2341 gaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2401 aaaaaaaaaa aaaaccctcg gg
//