LOCUS BC004216 2400 bp mRNA linear HUM 27-OCT-2006
DEFINITION Homo sapiens calcium binding atopy-related autoantigen 1, mRNA
(cDNA clone MGC:4521 IMAGE:3009677), complete cds.
ACCESSION BC004216
VERSION BC004216.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2400)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2400)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 20, 2003 this sequence version replaced BC004216.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 10 Row: a Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 11386184.
FEATURES Location/Qualifiers
source 1..2400
/db_xref="H-InvDB:HIT000031790"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4521 IMAGE:3009677"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2400
/gene="CBARA1"
/gene_synonym="CALC"
/gene_synonym="DKFZp564C246"
/gene_synonym="EFHA3"
/db_xref="GeneID:10367"
/db_xref="HGNC:HGNC:1530"
/db_xref="MIM:605084"
CDS 96..1526
/gene="CBARA1"
/gene_synonym="CALC"
/gene_synonym="DKFZp564C246"
/gene_synonym="EFHA3"
/codon_start=1
/product="calcium binding atopy-related autoantigen 1"
/protein_id="AAH04216.1"
/db_xref="GeneID:10367"
/db_xref="HGNC:HGNC:1530"
/db_xref="MIM:605084"
/translation="MFRLNSLSALAELAVGSRWYHGGSQPIQIRRRLMMVAFLGASAV
TASTGLLWKRAHAESPPCVDNLKSDIGDKGKNKDEGDVCNHEKKTADLAPHPEEKKKK
RSGFRDRKVMEYENRIRAYSTPDKIFRYFATLKVISEPGEAEVFMTPEDFVRSITPNE
KQPEHLGLDQYIIKRFDGKKISQEREKFADEGSIFYTLGECGLISFSDYIFLTTVLST
PQRNFEIAFKMFDLNGDGEVDMEEFEQVQSIIRSQTSMGMRHRDRPTTGNTLKSGLCS
ALTTYFFGADLKGKLTIKNFLEFQRKLQHDVLKLEFERHDPVDGRITERQFGGMLLAY
SGVQSKKLTAMQRQLKKHFKEGKGLTFQEVENFFTFLKNINDVDTALSFYHMAGASLD
KVTMQQVARTVAKVELSDHVCDVVFALFDCDGNGELSNKEFVSIMKQRLMRGLEKPKD
MGFTRLMQAMWKCAQETAWDFALPKQ"
BASE COUNT 664 a 560 c 574 g 602 t
ORIGIN
1 agggggtgga ggtttgtctc cgctgtttca tctctatggc tgtcagaggt gggcggcttt
61 gaccgagagg ctgctggagc tcgtgtttgg acgcgatgtt tcgtctgaac tcactttctg
121 ctttggcaga actggctgtg ggttctcgat ggtaccatgg aggatcacag cccatccaga
181 tccggcgaag actaatgatg gtggctttcc tgggagcatc tgcagtaact gcaagtactg
241 gtcttttgtg gaagagggcc catgcagaat ctccaccatg tgtagacaac ctaaaaagtg
301 acatcggtga taaagggaag aataaagatg aaggggatgt ttgtaaccat gagaaaaaga
361 ctgcagatct tgcccctcac ccagaagaga aaaagaagaa acgttctgga ttcagagaca
421 gaaaagtgat ggaatatgag aataggattc gagcctactc cacgccagac aaaatcttcc
481 gatattttgc caccttgaaa gtcatcagtg agcctggtga agcagaagtg tttatgacac
541 cagaagattt tgtgcgatcc ataacaccca atgaaaaaca accagaacac ttgggtctgg
601 atcaatatat aataaaacgc tttgatggaa agaaaatttc ccaggaacga gaaaaatttg
661 ctgatgaagg cagtatattt tacacccttg gagaatgtgg gctcatatcc ttttcagact
721 acattttcct cacaactgtt ctttccactc ctcagagaaa ttttgaaatt gccttcaaga
781 tgtttgattt gaatggagat ggagaagtag atatggaaga atttgaacag gttcagagca
841 tcattcgctc ccaaaccagt atgggtatgc gccacagaga tcgtccaact actggcaaca
901 ccctcaagtc tggcttgtgt tcagccctca caacctactt ttttggagct gatctgaagg
961 gaaagctgac aatcaaaaac ttcctcgaat ttcagcgtaa actgcagcat gatgttctga
1021 agcttgagtt tgaacgccat gaccctgtgg atgggagaat tactgagagg cagtttggtg
1081 gcatgctact tgcctacagt ggggtgcagt ccaagaagct gaccgccatg cagaggcagc
1141 tcaagaagca cttcaaagaa ggaaagggtc tgacatttca ggaggtggag aacttcttta
1201 ctttcctaaa gaacattaat gatgtggaca ctgcattgag tttttaccat atggctggag
1261 catctcttga taaagtgacc atgcagcagg tggccaggac agtggctaaa gtggagctct
1321 cagaccacgt gtgtgatgtg gtgtttgcac tctttgactg tgatggcaat ggcgaactga
1381 gcaataagga atttgtttcc atcatgaagc aacggctgat gagaggcctg gaaaagccca
1441 aagacatggg tttcactcgc ctcatgcagg ccatgtggaa atgtgcacag gaaactgcct
1501 gggacttcgc tttacccaaa cagtaacccc acactgcaag aggggacccc tccaccccca
1561 gtaccctgga ccccctccgc agagtctcgg cagagccctt tgtgctgctg cttctggaag
1621 tagtccccct tcctcccggg atgacctcag gactctgtcg gtttcccctc tttacccttc
1681 cccgtccccg tgttctgctg ggctctgatt ctgcccaatg agtatcccca taggttctca
1741 aaaacatgaa caagtctgta aagctcagac atttgtcagc ctcaacagca ccacccattc
1801 aagcatcctg tggataaaga attcagggaa ccatccacac acctgccaac cctgggaagc
1861 atccagttct caaatcgttt ttgctatgga tttatactaa caagaacatt ccttgacttc
1921 cctcctgctg gtgttttaaa gccacaagta gggaagatat ctggcaggca gaaagaagtc
1981 tgtgatgata aacaatgatg aggatgacct aggcacccta cgctagtgtg agaagcctgc
2041 gccccaggaa ggatctgtgt tagtccctgg gatggctcca aggcctgctc taggaaggca
2101 gcatgctcag tgggaacaca gcaagattca gaatttaaag tagttgcttc atggctctgt
2161 gcactccctt ttcttcctcg cagcctccct aagatgactc cagtgtgacc ctgtgcttag
2221 tgagcaatag tgattgagct catgttccct gcaagtgcca tttcctctcc aggatgggcc
2281 tctaaagctg aggcctggct cagagcctgt ttgccctctg tcttaaacaa ttgtaaatat
2341 cacttaaatt ataaccattt gcaataaaca tccccaaagt taaaaaaaaa aaaaaaaaaa
//