LOCUS BC004194 1069 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens HMG box domain containing 4, mRNA (cDNA clone
IMAGE:3528436), partial cds.
ACCESSION BC004194
VERSION BC004194.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1069)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1069)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC004194.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 11 Row: e Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 51173870.
FEATURES Location/Qualifiers
source 1..1069
/db_xref="H-InvDB:HIT000086306"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3528436"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..>1069
/gene="HMGXB4"
/gene_synonym="HMGBCG"
/gene_synonym="THC211630"
/db_xref="GeneID:10042"
/db_xref="HGNC:HGNC:5003"
/db_xref="MIM:604702"
CDS 217..>1069
/gene="HMGXB4"
/gene_synonym="HMGBCG"
/gene_synonym="THC211630"
/codon_start=1
/product="HMGXB4 protein"
/protein_id="AAH04194.1"
/db_xref="GeneID:10042"
/db_xref="HGNC:HGNC:5003"
/db_xref="MIM:604702"
/translation="MDLLKAITSPLAAGSKPSKKTGEKSSGSSSHSESKKEHHRKKVS
GSSGELPLEDGVSHKSKKMKPLYVNTETLTLREPDGLKMKLILSPKEKGSSSVDEESF
QYPSQQATVKKSSKKSARDEQGALLLGHELQSFLKTARKKHKSSSDAHSSPGPEGCGS
DASQFAESHSANLDLSGLEPILVESDSSSGGELEAGELVIDDSYREIKKKKKSKKSKK
KKDKEKHKEKRHSKSKRSLGLSAVPVGEVTVTSGPPPSIPYAGAAAPPLPLPGLHTDG
HSEKKKKK"
BASE COUNT 341 a 244 c 264 g 220 t
ORIGIN
1 ggaagcactc ctctgatgat tactactatg gaggacagtg gttcttgttc tgagtgccga
61 taaaccagtg tgaaggagga gagaggtgga gggctggtat tttggaggat tcagcataga
121 agaacagtct gcatttgtga tacaccagat atttcgtctt tggaatcgtc acagaagaaa
181 aagaaaaagt ccagcccaca gtctactgat acagctatgg acctgttgaa agctatcact
241 tccccactgg cagcaggctc caagccctcc aaaaagactg gggagaaatc ctctggctct
301 tcaagccatt cggagagtaa aaaggagcac cacaggaaga aagtcagtgg aagcagtggg
361 gaactacccc tagaggatgg tgtctcccac aaatcgaaaa aaatgaaacc tctctatgtg
421 aacacagaga cactgaccct tcgggagcct gatggtttaa aaatgaaact tattctgtca
481 ccaaaggaga agggaagcag ctctgttgat gaggagtctt ttcaatatcc ctcccaacaa
541 gcgactgtga aaaaatcctc aaagaaatca gctcgggatg agcagggtgc tttactccta
601 ggacatgagt tacagagctt tctgaaaaca gcccggaaaa agcacaagtc atcctcagac
661 gcacattcat ctcctggccc tgaaggctgt gggtctgacg cctcccagtt cgcagagtcc
721 cacagtgcta accttgatct ttcagggctt gaacctattc tggtagaatc agactcatcc
781 tctggtgggg aactagaggc tggggagtta gtgatagatg attcttaccg agaaatcaag
841 aagaaaaaga agtcaaagaa gagcaaaaag aagaaagaca aggagaagca taaagagaag
901 cgacactcca agtccaagag aagtttagga ctttctgccg tgccagtggg agaggtcaca
961 gtgacatctg gccctcctcc cagcatccca tacgctggag cagcagcacc tcccctgcca
1021 cttcctggcc tccacacaga tgggcatagt gaaaaaaaaa aaaaaaaaa
//