LOCUS BC004145 1675 bp mRNA linear HUM 21-OCT-2003
DEFINITION Homo sapiens trinucleotide repeat containing 4, mRNA (cDNA clone
IMAGE:3509783), partial cds.
ACCESSION BC004145
VERSION BC004145.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1675)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1675)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 8, 2003 this sequence version replaced BC004145.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 7 Row: j Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 6005724.
FEATURES Location/Qualifiers
source 1..1675
/db_xref="H-InvDB:HIT000086297"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3509783"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1675
/gene="TNRC4"
/gene_synonym="BRUNOL1"
/gene_synonym="CAGH4"
/gene_synonym="CELF3"
/gene_synonym="ERDA4"
/db_xref="GeneID:11189"
CDS <1..878
/gene="TNRC4"
/gene_synonym="BRUNOL1"
/gene_synonym="CAGH4"
/gene_synonym="CELF3"
/gene_synonym="ERDA4"
/codon_start=3
/product="TNRC4 protein"
/protein_id="AAH04145.2"
/db_xref="GeneID:11189"
/translation="SSGTQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF
LTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGDRKLFVGMLGKQQTDEDV
RKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLV
VKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYLS
PMATMAAVQMQHMAAINANGLIATPITPSSLKGHGYASLAPRAHFLLDALLAFVRERG
TGSKAPGYLPSAGLL"
misc_feature 261..443
/gene="TNRC4"
/gene_synonym="BRUNOL1"
/gene_synonym="CAGH4"
/gene_synonym="CELF3"
/gene_synonym="ERDA4"
/note="RRM; Region: RNA recognition motif"
/db_xref="CDD:smart00360"
BASE COUNT 376 a 488 c 452 g 359 t
ORIGIN
1 agagctccgg gacccagatc ccgaggcatc tggaggagaa ggacctgaag cccatcttcg
61 aacagtttgg tcggatcttt gagctgactg tcatcaagga caagtacacc gggctgcaca
121 agggatgtgc cttcctgaca tactgtgccc gggattcagc cctgaaggcc cagagcgccc
181 tgcacgaaca gaagacgctt ccagggatga acaggccgat ccaggtcaag ccagccgaca
241 gcgagagccg aggagaccgg aagctctttg tggggatgct agggaagcag cagacagatg
301 aggacgtccg gaagatgttt gagcccttcg ggaccatcga cgagtgcact gtgctccggg
361 ggccagatgg caccagcaaa ggctgcgcct tcgtgaagtt ccagacccac gctgaggccc
421 aggcggccat caacaccctt cacagcagcc ggaccctgcc aggtgcctcg tccagcctgg
481 tggtgaagtt tgctgacact gagaaggagc gaggtctccg ccgcatgcag caggtggcca
541 cccagttggg catgttcagc cccatcgccc tccagtttgg agcctacagc gcctacaccc
601 aggccctgat gcagcagcag gcggccctgg tagcggctca cagtgcctac ctcagcccca
661 tggccaccat ggctgccgtg cagatgcagc acatggctgc catcaatgcc aatggcctca
721 tcgccacccc catcacccca tcctctctga agggccatgg ctatgcttcc ctggctccaa
781 gggcccattt cctcctagat gcccttttgg cctttgtgag ggagcgagga acaggctcga
841 aggctccggg gtatctgcct tctgctgggc tcctgtgaca ggccttctgt gcccagcgtt
901 tgtacttgcc tcccccaaca gtgggcctgt tctacccgtg caggccccag gagagccgca
961 ggggcctgcc acacactccc agctcaccct caccccagcc tcttccccac attaggggtt
1021 tcttggaagc tggctctcac tcccctccac cctcagctag aggtaggata tccctgattc
1081 ctgggctccc agccctaaaa ctcactgcct cccccaaggg ccccctctaa ggagggtgtg
1141 ggggagccct gagggctgcc tctctgccag tcagccacag agaccctcct cctttcacga
1201 ggaaaagacc ttcccctgaa cccctaaaaa tgtttacagt ctctgctggt tccctctgtg
1261 taaataccac taccacccgt gcgttatcca gcccgcccgg cctggcccgg acgctgccat
1321 ctctctttct gggagtttag acaatgttgc ccttggattt ttttctctct cttaatttct
1381 ccctttgctt tggggggtaa ttgggtattg ggaggagggg gtgtggggag gggtcaaggg
1441 gtttattacc tgatcatttt ctttaggaag aggttttagg gaaaagaaaa tggggtgggg
1501 gtgggggtgg taaggggaga ccggggagtc agtttcagac agttctctat gcttaactta
1561 tttatttatt gcattttact tttaaagagt tggtcttttc tgtctaaata aagaaaaaag
1621 tttaaaagcc aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
//