LOCUS BC004119 2702 bp mRNA linear HUM 04-NOV-2003
DEFINITION Homo sapiens CDKN1A interacting zinc finger protein 1, mRNA (cDNA
clone MGC:1118 IMAGE:3507940), complete cds.
ACCESSION BC004119
VERSION BC004119.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2702)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2702)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC004119.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 7 Row: g Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 6912307.
FEATURES Location/Qualifiers
source 1..2702
/db_xref="H-InvDB:HIT000031715"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1118 IMAGE:3507940"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2702
/gene="CIZ1"
/gene_synonym="LSFR1"
/gene_synonym="ZNF356"
/db_xref="GeneID:25792"
CDS 4..2517
/gene="CIZ1"
/gene_synonym="LSFR1"
/gene_synonym="ZNF356"
/codon_start=1
/product="CIZ1 protein"
/protein_id="AAH04119.1"
/db_xref="GeneID:25792"
/translation="MFSQQQQQQLQQQQQAPLPMAVSRGLPPQQPQQPLLNLQGTNSA
SLLNGSMLQRALLLQQLQGLDQFAMPPATYDTAGLTMPTATLGNLRGYGMASPGLAAP
SLTPPQLATPNLQQFFPQATRQSLLGPPPVGVPMNPSQFNLSGRNPQKQARTSSSTTP
NRKDSSSQTMPVEDKSDPPEGSEEAAEPRMDTPEDQDLPPCPEDIAKEKRTPAPEPEP
CEASELPAKRLRSSEEPTEKEPPGQLQVKAQPQARMTVPKQTQTPDLLPEALEAQVLP
RFQPRVLQVQAQVQSQTQPRIPSTDTQVQPKLQKQAQTQTSPEHLVLQQKQVQPQLQQ
EAEPQKQVQPQVQPQAHSQGPRQVQLQQEAEPLKQVQPQVHTQAQPSVQPQEHPPAQV
SVQPPEQTHEQPHTQPQVSLLAPEQTPVVVHVCGLEMPPDAVEAGGGMEKTLPEPVGT
QVSMEEIQNESACGLDVGECENRAREMPGVWGAGGSLKVTILQSSDSRAFSTVPLTPV
PRPSDSVSSTPAATSTPSKQALQFFCYICKASCSSQQEFQDHMSEPQHQQRLGEIQHM
SQACLLSLLPVPRDVLETEDEEPPPRRWCNTCQLYYMGDLIQHRRTQDHKIAKQSLRP
FCTVCNRYFKTPRKFVEHVKSQGHKDKAKELKSLEKEIAGQDEDHFITVDAVGCFEGD
EEEEEDDEDEEEIEVEEELCKQVRSRDISREEWKGSETYSPNTAYGVDFLVPVMGYIC
RICHKFYHSNSGAQLSHCKSLGHFENLQKYKAAKNPSPTTRPVSRRCAINARNALTAL
FTSSGRPPSQPNTQDKTPSKVTARPSQPPLPRRSTRLKT"
misc_feature 1594..1683
/gene="CIZ1"
/gene_synonym="LSFR1"
/gene_synonym="ZNF356"
/note="ZnF_U1; Region: U1-like zinc finger"
/db_xref="CDD:smart00451"
BASE COUNT 717 a 861 c 703 g 421 t
ORIGIN
1 accatgttca gccagcagca gcagcagcag ctccaacaac agcagcaggc cccgttgccc
61 atggctgtca gccgggggct ccccccgcag cagccacagc agccgcttct gaatctccag
121 ggcaccaact cagcctccct cctcaacggc tccatgctgc agagagcttt gcttttacag
181 cagttgcaag gactggacca gtttgcaatg ccaccagcca cgtatgacac tgccggtctc
241 accatgccca cagcaacact gggtaacctc cgaggctatg gcatggcatc cccaggcctc
301 gcagccccca gcctcacacc cccacaactg gccactccaa atttgcaaca gttctttccc
361 caggccactc gccagtcctt gctgggacct cctcctgttg gggtccccat gaacccttcc
421 cagttcaacc tttcaggacg gaacccccag aaacaggccc ggacctcctc ctctaccacc
481 cccaatcgaa aggattcttc ttctcagaca atgcctgtgg aagacaagtc agacccccca
541 gaggggtctg aggaagccgc agagccccgg atggacacac cagaagacca agatttaccg
601 ccctgcccag aggacatcgc caaggaaaaa cgcactccag cacctgagcc tgagccttgt
661 gaggcgtccg agctgccagc aaagagattg aggagctcag aagagcccac agagaaggaa
721 cctccagggc agttacaggt gaaggcccag ccgcaggccc ggatgacagt accgaaacag
781 acacagacac cagacctgct gcctgaggcc ctggaagccc aagtgctgcc acgattccag
841 ccacgggtcc tgcaggtcca ggcccaggtg cagtcacaga ctcagccgcg gataccatcc
901 acagacaccc aggtgcagcc aaagctgcag aagcaggcgc aaacacagac ctctccagag
961 cacttagtgc tgcaacagaa gcaggtgcag ccacagctgc agcaggaggc agagccacag
1021 aagcaggtgc agccacaggt acagccacag gcacattcac agggcccaag gcaggtgcag
1081 ctgcagcagg aggcagagcc gctgaagcag gtgcagccac aggtccacac acaggcacag
1141 ccaagcgtcc agccacagga gcatcctcca gcgcaggtgt cagtacagcc accagagcag
1201 acccatgagc agcctcacac ccagccgcag gtgtcgttgc tggctccaga gcaaacacca
1261 gttgtggttc atgtctgcgg gctggagatg ccacctgatg cagtagaagc tggtggaggc
1321 atggaaaaga ccttgccaga gcctgtgggc acccaagtca gcatggaaga gattcagaat
1381 gagtcggcct gtggcctaga tgtgggagaa tgtgaaaaca gagcgagaga gatgccaggg
1441 gtatggggcg ccgggggctc cctgaaggtc accattctgc agagcagtga cagccgggcc
1501 tttagcactg tacccctgac acctgtcccc cgccccagtg actccgtctc ctccacccct
1561 gcggctacca gcactccctc taagcaggcc ctccagttct tctgctacat ctgcaaggcc
1621 agctgctcca gccagcagga gttccaggac cacatgtcgg agcctcagca ccagcagcgg
1681 ctaggggaga tccagcacat gagccaagcc tgcctcctgt ccctgctgcc cgtgccccgg
1741 gacgtcctgg agacagagga tgaggagcct ccaccaaggc gctggtgcaa cacctgccag
1801 ctctactaca tgggggacct gatccaacac cgcaggacac aggaccacaa gattgccaaa
1861 caatccttgc gacccttctg caccgtttgc aaccgctact tcaaaacccc tcgcaagttt
1921 gtggagcacg tgaagtccca ggggcataag gacaaagcca aggagctgaa gtcgcttgag
1981 aaagaaattg ctggccaaga tgaggaccac ttcattacag tggacgctgt gggttgcttc
2041 gagggtgatg aagaagagga agaggatgat gaggatgaag aagagatcga ggttgaggag
2101 gaactctgca agcaggtgag gtccagagat atatccagag aggagtggaa gggctcggag
2161 acctacagcc ccaatactgc atatggtgtg gacttcctgg tgcccgtgat gggctatatc
2221 tgccgcatct gccacaagtt ctatcacagc aactcagggg cacagctctc ccactgcaag
2281 tccctgggcc actttgagaa cctgcagaaa tacaaggcgg ccaagaaccc cagccccacc
2341 acccgacctg tgagccgccg gtgcgcaatc aacgcccgga acgctttgac agccctgttc
2401 acctccagcg gccgcccacc ctcccagccc aacacccagg acaaaacacc cagcaaggtg
2461 acggctcgac cctcccagcc cccactacct cggcgctcaa cccgcctcaa aacctgatag
2521 agggacctcc ctgtccctgg cctgcctggg tccagatctg ctaatgcttt ttaggagtct
2581 gcctggaaac tttgacatgg ttcatgtttt tactcaaaat ccaataaaac aaggtagttt
2641 ggcaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2701 aa
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