LOCUS BC004117 1120 bp mRNA linear HUM 07-OCT-2003
DEFINITION Homo sapiens dehydrodolichyl diphosphate synthase, mRNA (cDNA clone
MGC:11169 IMAGE:3843062), complete cds.
ACCESSION BC004117
VERSION BC004117.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1120)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1120)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC004117.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 14 Row: e Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13376336.
FEATURES Location/Qualifiers
source 1..1120
/db_xref="H-InvDB:HIT000031713"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:11169 IMAGE:3843062"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1120
/gene="DHDDS"
/gene_synonym="DS"
/gene_synonym="FLJ13102"
/gene_synonym="HDS"
/db_xref="GeneID:79947"
CDS 93..977
/gene="DHDDS"
/gene_synonym="DS"
/gene_synonym="FLJ13102"
/gene_synonym="HDS"
/codon_start=1
/product="DHDDS protein"
/protein_id="AAH04117.1"
/db_xref="GeneID:79947"
/translation="MSWIKEGELSLWERFCANIIKAGPMPKHIAFIMDGNRRYAKKCQ
VERQEGHSQGFNKLAETLRWCLNLGILEVTVYAFSIENFKRSKSEVDGLMDLARQKFS
RLMEEKCFLNVCFAYTSRHEISNAVREMAWGVEQGLLDPSDISESLLDKCLYTNRSPH
PDILIRTSGEVRLSDFLLWQTSHSCLVFQPVLWPEYTFWNLFEAILQFQMNHSVLQKA
RDMYAEERKRQQLERDQATVTEQLLREGLQASGDAQLRRTRLHKLSARREERVQGFLQ
ALELKRADWLARLGTASA"
misc_feature 162..728
/gene="DHDDS"
/gene_synonym="DS"
/gene_synonym="FLJ13102"
/gene_synonym="HDS"
/note="UppS; Region: Undecaprenyl pyrophosphate synthase
[Lipid metabolism]"
/db_xref="CDD:COG0020"
BASE COUNT 292 a 281 c 309 g 238 t
ORIGIN
1 ctgaagccgt ggggacgcgc ccagcggagc taatcagatt acctggctgg tgtttgcttg
61 ttctggagtg atcttctgac tggaaaagaa ctatgtcatg gatcaaggaa ggagagctgt
121 cactttggga gcggttctgt gccaacatca taaaggcagg cccaatgccg aaacacattg
181 cattcataat ggacgggaac cgtcgctatg ccaagaagtg ccaggtggag cggcaggaag
241 gccactcaca gggcttcaac aagctagctg agactctgcg gtggtgtttg aacctgggca
301 tcctagaggt gacagtctac gcattcagca ttgagaactt caaacgctcc aagagtgagg
361 tagacgggct tatggatctg gcccggcaga agttcagccg cttgatggaa gaaaagtgtt
421 tcctgaatgt ctgttttgca tacacatccc gtcatgagat cagcaatgct gtgagagaga
481 tggcctgggg ggtggagcaa ggcctgttgg atcccagtga tatctctgag tctctgcttg
541 ataagtgcct ctataccaac cgctctcctc atcctgacat cttgatacgg acttctggag
601 aagtgcggct gagtgacttc ttgctatggc agacctctca ctcctgcctg gtgttccaac
661 ccgttctgtg gccagagtat acattttgga acctcttcga ggccatcctg cagttccaga
721 tgaaccatag cgtgcttcag aaggcccgag acatgtatgc agaggagcgg aagaggcagc
781 agctggagag ggaccaggct acagtgacag agcagctgct gcgagagggg ctccaagcca
841 gtggggacgc ccagctccga aggacacgct tgcacaaact ctcggccaga cgggaagagc
901 gagtccaagg cttcctgcag gccttggaac tcaagcgagc tgactggctg gcccgtctgg
961 gcactgcatc agcctgaatg aggctggcca cctgccactt tgccctgccc tctgcctcca
1021 gggctccact ccccttcctt ttcttggtga aaggcacctc ctttcctgat aaaaaaaaaa
1081 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//