LOCUS BC003696 3854 bp mRNA linear HUM 16-SEP-2003
DEFINITION Homo sapiens suppressor of Ty 6 homolog (S. cerevisiae), mRNA (cDNA
clone IMAGE:3456230), partial cds.
ACCESSION BC003696
VERSION BC003696.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3854)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3854)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (28-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 4 Row: p Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..3854
/db_xref="H-InvDB:HIT000086281"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3456230"
/tissue_type="Cervix, carcinoma"
/clone_lib="NIH_MGC_12"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..3854
/gene="SUPT6H"
/gene_synonym="emb-5"
/gene_synonym="KIAA0162"
/gene_synonym="SPT6"
/gene_synonym="SPT6H"
/db_xref="GeneID:6830"
/db_xref="MIM:601333"
CDS <1..3232
/gene="SUPT6H"
/gene_synonym="emb-5"
/gene_synonym="KIAA0162"
/gene_synonym="SPT6"
/gene_synonym="SPT6H"
/codon_start=2
/product="SUPT6H protein"
/protein_id="AAH03696.1"
/db_xref="GeneID:6830"
/db_xref="MIM:601333"
/translation="DQFLKICLAEDEGLLTTDISIDLKGVEGYGNDQTYFEEIKQFYY
RDEFSHQVQEWNRQRTMAIERALQQFLYVQMAKELKNKLLAEAKEYVIKACSRKLYNW
LRVAPYRPDQQVEEDDDFMDENQGKGIRVLGIAFSSARDHPVFCALVNGEGEVTDFLR
LPHFTKRRTAWREEEREKKAQDIETLKKFLLNKKPHVVTVAGENRDAQMLIEDVKRIV
HELDQGQQLSSIGVELVDNELAILYMNSKKSEAEFRDYPPVLRQAVSLARRIQDPLIE
FAQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQA
LIQYVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASL
GDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERLK
DLDLDAFAEELERQGYGDKHITLYDIRAELSCRYKDLRTAYRSPNTEEIFNMLTKETP
ETFYIGKLIICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNHF
DSGSCPGQAIGVKTRLDNGVTGFIPTKFLSDKVVKRPEERVKVGMTVHCRIMKIDIEK
FSADLTCRTSDLMDRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAH
PSFHNINFKQAEKMMETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKEN
AFSLGATLWINSEEFEDLDEIVARYVQPMASFARDLLNHKYYQDCSGGDRKKLEELLI
KTKKEKPTFIPYFICACKELPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNG
LFRWFKDHYQDPVPGITPSSSSRTRTPASINATPANINLADLTRAVNALPQNMTSQMF
SAIAAVTGQGQNPNATPAQWASSQYGYGGSGGGSSAYHVFPTPAQQPVATPLMTPSYS
YTTPSQPITTPQYHQLQASTTPQSAQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQ
WLQEKEAERRKQKQRLTPRPSPSPMIESTPMSIAGDATPLLDEMDR"
misc_feature 2..1513
/gene="SUPT6H"
/gene_synonym="emb-5"
/gene_synonym="KIAA0162"
/gene_synonym="SPT6"
/gene_synonym="SPT6H"
/note="CSZ; Region: domain in chromatin remodeling S1
domain containing proteins and zinc fingers"
/db_xref="CDD:smart00578"
BASE COUNT 1009 a 1048 c 1040 g 757 t
ORIGIN
1 tgaccagttt ctcaagatat gcctggctga agacgaaggg ctcctcacca ctgacatcag
61 catagatttg aagggagtgg aaggctatgg caacgaccag acatattttg aggagataaa
121 acagttttac taccgagatg agttcagcca ccaggtgcag gagtggaacc ggcagcgcac
181 catggccatc gaacgggctt tacagcagtt cctctatgtg cagatggcca aagaactcaa
241 gaacaagctg ctggctgaag ccaaggaata tgtcataaag gcctgtagtc gaaagctcta
301 caattggttg agagtggcac cctaccgacc agatcagcag gtggaagaag atgacgactt
361 tatggacgag aaccaaggga agggcattcg agtcctcggc attgctttct cctctgccag
421 agatcaccct gtgttctgcg ccctggtcaa tggtgaagga gaagtgacag acttccttcg
481 actgccccat tttaccaaac ggcgaactgc atggagagag gaagagcggg aaaagaaggc
541 tcaagacatt gaaacgctaa agaaatttct cctgaataag aagcctcatg tagtgacagt
601 tgcaggagag aacagggacg cccagatgtt gattgaagat gtgaagcgca ttgtacatga
661 gctggaccag ggccagcagc tgtcatctat tggggtagag ctggttgaca acgagttggc
721 cattctctat atgaacagca agaagtcaga ggcagagttc cgggattatc ctccagtgct
781 gagacaggcc gtctccctgg cccggcgcat ccaggaccct ctgattgaat ttgcccaggt
841 gtgcagttcc gatgaagaca tcctgtgtct caagtttcac cccttgcagg agcatgtggt
901 gaaagaggag ctgctcaacg ccttgtactg tgaatttatc aaccgagtca atgaggtcgg
961 ggtcgatgtc aaccgtgcca ttgcccaccc ttacagccag gccttgatcc agtatgtttg
1021 tggcctggga cctcggaaag ggacccacct cctgaagatc ctgaagcaga acaacacccg
1081 gctcgagagc cggacccagc tggtcaccat gtgccacatg ggtcccaaag tcttcatgaa
1141 ttgtgctggc ttcctcaaga tcgacacggc ctccctgggg gacagcactg actcatatat
1201 tgaagtcctt gatggttccc gtgtccaccc tgagacttat gagtgggcta ggaagatggc
1261 agtggatgcc ctggaatacg atgaatcagc cgaggatgcc aatcctgcag gagcccttga
1321 agaaatcttg gaaaacccag agcgactgaa agacctggac cttgatgcct ttgcagaaga
1381 gctggagagg cagggctatg gtgacaaaca catcacactc tatgacatcc gggcagagct
1441 gagctgtcga tataaggacc tccggacagc ctaccgctct cccaacacag aggagatctt
1501 caatatgtta accaaagaaa caccagagac cttctacatt ggaaagctca tcatctgcaa
1561 tgtcactggc attgcccaca ggcgtcccca gggtgagagc tatgaccagg cgatccgcaa
1621 tgatgagaca gggctgtggc agtgcccctt ctgtcagcag gacaatttcc ctgaactaag
1681 cgaggtgtgg aaccactttg acagcggttc gtgcccaggc caggccatcg gtgtcaaaac
1741 acggctagac aatggtgtca ccggcttcat ccccaccaaa ttcctcagtg acaaagtggt
1801 aaagcggcca gaagaacgag tgaaggtggg aatgactgtt cactgccgca tcatgaagat
1861 tgacattgag aagttcagtg cagacctgac ctgccgcacc tcagacctca tggacaggaa
1921 caatgagtgg aagctgccca aagacaccta ctatgacttt gatgctgaag ctgcagacca
1981 caagcaggag gaggacatga agcggaagca gcagcggacc acatacatca agagagtgat
2041 cgcacaccca tccttccata atatcaattt caagcaagca gaaaagatga tggagaccat
2101 ggaccagggt gatgtgatta tccgaccaag cagcaagggc gagaaccacc tgacagtgac
2161 ctggaaagtc agtgatggca tctaccagca tgtggatgtg cgggaggagg gcaaggaaaa
2221 tgccttcagc ctgggagcca ctctgtggat caacagtgag gaattcgaag atttggatga
2281 gattgttgct cgctatgtcc agcccatggc atcctttgcc cgggaccttc tgaatcacaa
2341 gtattatcag gactgcagcg gtggggaccg caagaaatta gaggagctgc tcatcaaaac
2401 taagaaggag aagcccacct tcatccctta tttcatctgt gcctgcaagg aactgcccgg
2461 caagttccta ctgggatacc agccccgggg taaacccagg atagaatatg taacggtgac
2521 tccagaggga ttccggtacc ggggccagat cttcccaacc gtgaatggac tgtttagatg
2581 gtttaaggat cactaccagg atcctgtacc aggcatcacc cctagcagca gcagcaggac
2641 ccggacacct gcctctatca atgctacccc agccaacatc aaccttgcag atctgacacg
2701 ggctgtgaat gccctgcctc agaacatgac ttcacagatg ttcagtgcca ttgctgcggt
2761 gacaggccaa ggacagaacc ctaatgccac cccagcccag tgggcctcca gccagtacgg
2821 ctatggcggc agtggaggcg gcagcagtgc ttaccacgta ttcccaacgc cagcccagca
2881 gccagtggcc acaccactaa tgacccctag ctactcctac acgaccccaa gccagcccat
2941 caccacccct cagtaccacc agctccaggc cagcaccacc ccacagtcgg cccaggccca
3001 gccccagccc tcttccagct cccggcaacg gcagcagcag ccaaagtcca acagccatgc
3061 agccatcgac tggggaaaaa tggcggagca gtggctgcag gaaaaggagg cagaacggcg
3121 gaaacagaag cagcggctga cacctcggcc ctcccccagc cccatgatcg aaagcacccc
3181 catgtccatt gctggcgatg ccaccccact cctggacgag atggatcggt agggggcctg
3241 ctcctcggac tctggttacc tctgaggctg ggaaaggcct ggctgcccac tgcctccctc
3301 cctgcccctc cttttatgtc cataaagtgg cgtgaagtga gacgttctct ttggtggtca
3361 acccggatgg gtgacaggct ggatggcctt gtgaacttga gctcagtgta tgctaggcaa
3421 caattctccc gctccagacc ctcaccgacc acctgtcctg ggaccaggct gggaggggag
3481 tgtggcaggg aggaggaaga ggaaggtgag aatgagtaga acagttttgt attctactcc
3541 ctacaagcca ttttgaactt ctgccctcac cggactctgg gctgtgactg gggcaccaaa
3601 ctcagcacat gagtctcccc tagctctcgt ggggagaggg atgctattta ttcagtttgg
3661 ggcaggaggg agaggaggga aagtatttct gaccctgatg ccaacagccg ggtggctgtc
3721 caagcaggat tgcaggggac acagggaagc actgcccagc ccctgcctgg ctgccctttc
3781 ccccctgctg ctgccaccgc ttcctgcctg tcatttgaat aaacagtgtt tctattgaaa
3841 aaaaaaaaaa aaaa
//