LOCUS BC003688 2645 bp mRNA linear HUM 03-NOV-2008
DEFINITION Homo sapiens pentatricopeptide repeat domain 1, mRNA (cDNA clone
IMAGE:3453948), partial cds.
ACCESSION BC003688
VERSION BC003688.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2645)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2645)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (28-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 4 Row: a Column: 23.
FEATURES Location/Qualifiers
source 1..2645
/db_xref="H-InvDB:HIT000031698"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3453948"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..2645
/gene="PTCD1"
/db_xref="GeneID:26024"
/db_xref="HGNC:HGNC:22198"
CDS <1..1790
/gene="PTCD1"
/codon_start=3
/product="PTCD1 protein"
/protein_id="AAH03688.2"
/db_xref="GeneID:26024"
/db_xref="HGNC:HGNC:22198"
/translation="AAQFHNLRFGERRDEQMEPEPKLWRGRRNTPYWYFLQCKHLIKE
GKLVEALDLFERQMLKEERLQPMESNYTVLIGGCGRVGYLKKAFNLYNQMKKRDLEPS
DATYTALFNVCAESPWKDSALQSALKLRQQLQAKNFELNLKTYHALLKMAAKCADLRM
CLDVFKEIIHKGHVVTEETFSFLLMGCIQDKKTGFRYALQVWRLMLSLGLQPSRDSYN
LLLVAARDCGLGDPQVASELLLKPREEATVLQPPVSRQRPRRTAQAKAGNLMSAMLHV
EALERQLFLEPSQALGPPEPPEARVPGKAQPEVDTKAEPSHTAALTAVALKPPPVELE
VNLLTPGAVPPTVVSFGTVTTPADRLALIGGLEGFLSKMAEHRQQPDIRTLTLLAEVV
ESGSPAESLLLALLDEHQVEADLTFFNTLVRKKSKLGDLEGAKALLPVLAKRGLVPNL
QTFCNLAIGCHRPKDGLQLLTDMKKSQVTPNTHIYSALINAAIRKLNYTYLISILKDM
KQNRVPVNEVVIRQLEFAAQYPPTFDRYQGKNTYLEKIDGFRAYYKQWLTVMPAEETP
HPWQKFRTKPQGDQDTGKEADDGCALGGR"
BASE COUNT 631 a 782 c 782 g 450 t
ORIGIN
1 ccgcagccca gttccataac ctgcggtttg gggaacggag agatgagcaa atggaaccgg
61 agcccaaatt atggcgaggc cggagaaaca ccccgtactg gtacttcttg cagtgcaaac
121 acctgatcaa ggaagggaag ctggttgaag ccctggacct gtttgagagg cagatgctga
181 aggaggagcg attgcagccc atggagagca actacacggt gctgattggg ggctgcgggc
241 gggttggcta cctgaagaag gccttcaacc tctacaacca gatgaaaaag cgggacctgg
301 agccctcgga cgccacctac acggccctgt tcaacgtctg tgccgagtcc ccctggaagg
361 actcagctct acagagcgcc ctgaagctcc ggcagcagct gcaggccaaa aacttcgagc
421 tcaacttgaa aacataccac gcgctgctga agatggctgc caagtgcgca gaccttagga
481 tgtgcctcga tgtgttcaag gaaatcatcc acaaagggca cgtggtcaca gaggagacct
541 tcagtttcct gctcatgggc tgcatccaag acaagaagac aggcttccgg tacgccctcc
601 aggtgtggcg gctgatgctg agtctagggc tacagccgag ccgggacagc tacaacctgc
661 tgttggtggc agctcgggac tgtggcctag gggaccccca ggtggcctca gagctgcttc
721 tgaagcccag ggaggaggcg actgtgcttc agcccccagt gagcaggcag cggccaagga
781 ggacagccca ggccaaggca ggcaacctca tgtcagccat gctgcatgtg gaggccctgg
841 agaggcagct gtttctggaa ccttctcagg cacttgggcc tccagagcct ccggaagcca
901 gagtgcccgg caaggcccaa ccagaggtgg atactaaggc agagcccagc cacacagcag
961 cactcaccgc agtggccctg aagccacctc ccgtggagct ggaagtcaac ctcctgaccc
1021 ctggggccgt tccccctaca gtggtctcct ttggaacggt gaccacccca gctgaccggc
1081 tggccttgat agggggcctg gagggcttcc tgagcaagat ggcagagcac aggcagcagc
1141 ccgacatcag gaccctcacg ctactggccg aggtggtgga gtccgggagt cctgcagagt
1201 ccttgctgct ggccctcctg gatgagcacc aggtagaggc cgacctgaca ttctttaaca
1261 cgctggtgag aaagaagagc aagctgggag acctggaggg ggccaaggcg ctgttgccgg
1321 tcctggcaaa gaggggcctc gtccccaacc tgcagacatt ctgcaacctg gccatcgggt
1381 gccacaggcc gaaggacggt ctacagcttc tcacagacat gaagaagtcc caggtgaccc
1441 ccaacactca catctacagt gccctcatca acgcggccat caggaagctg aactacacct
1501 atctcatcag catcttgaag gacatgaagc agaacagggt cccggtgaac gaagtggtca
1561 tccgccagct ggagtttgca gcccagtacc ctcccacctt tgaccggtac caagggaaga
1621 acacctacct ggagaagatt gacggcttcc gagcctatta caagcagtgg ctgacagtga
1681 tgcccgcaga ggaaaccccg cacccctggc agaagttccg gaccaagccc cagggggacc
1741 aggacaccgg caaggaggct gatgacggat gtgcccttgg gggcaggtga tgggagcaca
1801 gctggaacaa tgtgctcggc ccccagtgct ctgtgggagc cccaggacaa gtgagctggt
1861 gtcacctcct gcctggggga agagccaggc cctgaggaac agccgcagcg tgtcacaggt
1921 gttggtgagg acacacacta ggcccaaggt gcctgtgctc ccagcaggtc caagtgcagc
1981 tccagccacc tttgcgtgtc accttcacgg gacttccagc tccagctacc tttgtgtgtc
2041 acctcacaca ccacaagggg gctggggcat ctggtccctg gggcctgggc cgccccgccg
2101 ggttccatag gccgatgctc tgaaagaaga gacgtggggc tcgagagatt taaagatttt
2161 atttttacaa atcacagctg atagacagcg aagccttccc catagagacc gtgctccaac
2221 tcgggcctgg ggcactgctc gctgctccca ggaagggggt ggcgtgacag gcaggaacct
2281 gcgaagtcca gagtccaggg tggagcgcac cagcctcagc cagagcagcc acgacagcca
2341 cagtgtgtgc actcgatgat gcggccctgc aacggaggag gacagtgaga cgatgccact
2401 gcgccacgct cgcccctgca cactcacata tgtggcaacc ctcccacgaa ggacctgcca
2461 ccatgccata tagggacaca cctcagaaac ccttccttga cagctctgga cagggaaaat
2521 ttggctccct catgaaggta gaaccagctg ctgttgacac cgaggttaca tctgtatgtc
2581 tatttataat atgttctgca aatccaacac acgtttgcca atcaagaaaa aaaaaaaaaa
2641 aaaaa
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