LOCUS BC003681 2952 bp mRNA linear HUM 02-DEC-2004
DEFINITION Homo sapiens YTH domain family, member 1, mRNA (cDNA clone
IMAGE:3453235), partial cds.
ACCESSION BC003681
VERSION BC003681.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2952)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2952)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (28-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 4 Row: g Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31377749.
FEATURES Location/Qualifiers
source 1..2952
/db_xref="H-InvDB:HIT000086274"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3453235"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..2952
/gene="YTHDF1"
/gene_synonym="C20orf21"
/gene_synonym="FLJ20391"
/db_xref="GeneID:54915"
CDS <1..1648
/gene="YTHDF1"
/gene_synonym="C20orf21"
/gene_synonym="FLJ20391"
/codon_start=2
/product="YTHDF1 protein"
/protein_id="AAH03681.1"
/db_xref="GeneID:54915"
/translation="KGQDNKVQNGSLHQKDTVHDNDFEPYLTGQSNQSNSYPSMSDPY
LSSYYPPSIGFPYSLNEAPWSTAGDPPIPYLTTYGQLSNGDHHFMHDAVFGQPGGLGN
NIYQHRFNFFPENPAFSAWGTSGSQGQQTQSSAYGSSYTYPPSSLGGTVVDGQPGFHS
DTLSKAPGMNSLEQGMVGLKIGDVSSSAVKTVGSVVSSVALTGVLSGNGGTNVNMPVS
KPTSWAAIASKPAKPQPKMKTKSGPVMGGGLPPPPIKHNMDIGTWDNKGPVPKAPVPQ
QAPSPQAAPQPQQVAQPLPAQPPALAQPQYQSPQQPPQTRWVAPRNRNAAFGQSGGAG
SDSNSPGNVQPNSAPSVESHPVLEKLKAAHSYNPKEFEWNLKSGRVFIIKSYSEDDIH
RSIKYSIWCSTEHGNKRLDSAFRCMSSKGPVYLLFSVNGSGHFCGVAEMKSPVDYGTS
AGVWSQDKWKGKFDVQWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQV
LKIISSYKHTTSIFDDFAHYEKRQEEEEVVRKERQSRNKQ"
BASE COUNT 758 a 715 c 700 g 779 t
ORIGIN
1 aaaaggacaa gataataaag tacaaaatgg ttcgttacat cagaaggata cagttcatga
61 caatgacttt gagccctacc ttactggaca gtcaaatcag agtaacagtt acccctcaat
121 gagcgacccc tacctgtcca gctattaccc gccgtccatt ggatttcctt actccctcaa
181 tgaggctccg tggtctactg caggggaccc tccgattcca tacctcacca cctacggaca
241 gctcagtaac ggagaccatc attttatgca cgatgctgtt tttgggcagc ctgggggcct
301 ggggaacaac atctatcagc acaggttcaa ttttttccct gaaaaccctg cgttctcagc
361 atgggggaca agtgggtctc aaggtcagca gacccagagc tccgcgtatg ggagcagcta
421 cacctacccc ccgagctccc tgggtggcac ggtggttgat gggcagccag gctttcacag
481 cgacaccctc agcaaggccc ccgggatgaa cagcctggag cagggcatgg ttggcctgaa
541 gattggggac gtcagctcct ccgccgtcaa gacggtgggc tctgtcgtca gcagcgtggc
601 actgactggt gtcctttctg gcaacggtgg gacaaatgtg aacatgccag tttcaaagcc
661 gacctcgtgg gctgccattg ccagcaagcc tgcaaaacca cagcctaaaa tgaaaacaaa
721 gagcgggcct gtcatggggg gtgggctgcc ccctccaccc ataaagcata acatggacat
781 tggcacctgg gataacaagg ggcctgtgcc gaaggcccca gtcccccagc aggcaccctc
841 tccacaggct gccccacagc cccagcaggt ggctcagcct ctcccagcac agcccccagc
901 tttggctcaa ccgcagtatc agagccctca gcagccaccc cagacccgct gggttgcccc
961 acgcaacaga aacgcggcgt ttgggcagag cggaggggct ggcagcgata gcaactctcc
1021 tggaaacgtc cagcctaatt ctgcccccag cgtcgaatcc caccccgtcc ttgaaaaact
1081 gaaggctgct cacagctaca acccgaaaga gtttgagtgg aatctgaaaa gcgggcgtgt
1141 gttcatcatc aagagctact ctgaggacga catccaccgc tccattaagt actccatctg
1201 gtgtagcaca gagcacggca acaagcgcct ggacagcgcc ttccgctgca tgagcagcaa
1261 ggggcccgtc tacctgctct tcagcgtcaa tgggagtggg catttttgtg gggtggccga
1321 gatgaagtcc cccgtggact acggcaccag tgccggggtc tggtctcagg acaagtggaa
1381 ggggaagttt gatgtccagt ggatttttgt taaggatgta cccaataacc agctccggca
1441 catcaggctg gagaataacg acaacaaacc ggtcacaaac tcccgggaca cccaggaggt
1501 gcccttagaa aaagccaagc aagtgctgaa aattatcagt tcctacaagc acacaacctc
1561 catcttcgac gactttgctc actacgagaa gcgccaggag gaggaggagg tggtgcgcaa
1621 ggaacggcag agtcgaaaca aacaatgagg gcgaaccagt ttcttacatg ttctaacgtt
1681 tgactttgaa aacagtttaa aacacgtgtg cttggtcagc tccagtgtgt cgtcccgtgc
1741 gggggttgag tgttgcatct ttgcctttct tgtcgttgat ttttgcccag atggatctgc
1801 atttatttgt actttttcta tgtattataa tcctgtagaa gtcactaata aaggagtatt
1861 ttttttgtca gcttatcaat cagactgatc taatgtgaaa tgtaagtatc cttaaaaaca
1921 aagcatctat tttggcagaa attgtgttct taaattcagt catttgatat tctgtgagac
1981 ttcatatttc tcatcccttt attgcttttt agcaaacata agaaaccatg agtcattttg
2041 tcatttagag tattctgata aaatctcttg aaaatactga aatcaaaagg ttaatgattt
2101 tttgttcatt ctgatttgtc attttattat ctgttatcgg tctaaagtgc taatttaccc
2161 atttgatttt tctgctagac agataacttt taatttttca aatttggcag acactttttt
2221 tttttttttt gaaaatcttt ccttccagat ctgttgccca ctgaacagcc acccgtccct
2281 cactgtcctg gtgtccgatt gggctggatg gtgttggggc atgatgtgtg gaggaactgg
2341 aaggtgcttt aggtctggtt cagggtcggg cattctttgt tgtttgcaca tctttttaaa
2401 ttttacacct tttcttaaga attctaatgc cgtcttaagt ttttatacca ataatgctga
2461 gctttaagtg taggatctgg tagtacagac agtgtgatgg atgatgctgc tggttgtaaa
2521 tttcatcgtg tgtgtctaat tttttttcct gttgaatggg taaaaacaaa acaaaacttt
2581 ttttagaaga tgaatttgct gtcatgtttt gtggaatgag ggaccgttga gctcactacc
2641 acctggagtt tgagttgaag catgaaaatg gtgcccatgc ctgacgctcc agcgcctgga
2701 tctgcacgtg cccttgtaga ggatccttac cgtcctagag agcagacgct ttctgaaaac
2761 tacttgctcc aaaagaccct ctgagttaac gtttcagctg tatcattaga cttgtattta
2821 gagcgtgtca cttcctctga actgttactg cctgaatgga gtcctggacg acattgggtt
2881 tttcctctag gagaatacaa gccttaataa acaatactat ttagcaaaaa aaaaaaaaaa
2941 aaaaaaaaaa aa
//