LOCUS BC003647 1976 bp mRNA linear HUM 03-JAN-2005
DEFINITION Homo sapiens paxillin, mRNA (cDNA clone IMAGE:3534159), partial
cds.
ACCESSION BC003647
VERSION BC003647.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1976)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1976)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (26-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Nov 6, 2003 this sequence version replaced BC003647.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 11 Row: j Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..1976
/db_xref="H-InvDB:HIT000086263"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3534159"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1976
/gene="PXN"
/db_xref="GeneID:5829"
/db_xref="MIM:602505"
CDS <1..512
/gene="PXN"
/codon_start=3
/product="PXN protein"
/protein_id="AAH03647.2"
/db_xref="GeneID:5829"
/db_xref="MIM:602505"
/translation="HPEHFFCAQCGAFFGPEGFHEKDGKAYCRKDYFDMFAPKCGGCA
RAILENYISALNTLWHPECFVCRECFTPFVNGSFFEHDGQPYCEVHYHERRGSLCSGC
QKPITGRCITAMAKKFHPSPCTSPRTGLASTPHWSHLFLIFQQCSRGAGKGRQGLLGS
LFILIPPPT"
BASE COUNT 398 a 549 c 489 g 540 t
ORIGIN
1 ggcaccctga acacttcttc tgtgcacagt gtggagcctt ctttggtccc gaagggttcc
61 acgagaagga cggcaaggcc tactgtcgca aggactactt cgacatgttc gcacccaagt
121 gtggcggctg cgcccgggcc atcctggaga actatatctc agccctcaac acgctgtggc
181 atcctgagtg ctttgtgtgc cgggaatgct tcacgccatt cgtgaacggc agcttcttcg
241 agcacgacgg gcagccctac tgtgaggtgc actaccacga gcggcgcggc tcgctgtgtt
301 ctggctgcca gaagcccatc accggccgct gcatcaccgc catggccaag aagttccacc
361 ccagcccatg tacgtcccca cgaactggcc tggccagcac cccacactgg agccatctct
421 tcctcatatt tcagcagtgc agccgggggg cagggaaggg caggcagggt ctgttggggt
481 ctctttttat ccttattcct cccccgacct aattgtcttt gttctgtgat tattggggga
541 cacccggctc cctccagaca atgccagcat aaatccatcc atccaaaggc agagaaccaa
601 aggggccatg gaaggttctc tgtgctcctc ctacccttcc agtgccctag gcctggcgac
661 tgcccctgcc ttttagaccc gccctcccct tttatacctg ctcttgttct actgagaaaa
721 gcctctccag caataatgtt ttctagtcac ttcctccgtc tccgggacgg cgtgcctgga
781 cactgtaccg actttgatag atttctacac tgaggtttga attcatatcg cctgagttgc
841 ttttacttct ctatacaaaa tgattttgaa gagattttaa agacgttccc ttttgtattc
901 tcttcctcat ccaccgccac tgggcctgtc actgatggtg gctctggtgt gaagtttgct
961 ttgtactgag ggttggggtg gggaagcaat ttgtatttta ttgtttctta gcacaagcag
1021 gtgaactggg agcagctctg tgactccccc tctttcactt catagctcac caggactgtt
1081 ttataaactg ctgtatttgg aaaccccttc tttacttccc aggccagcaa gctcttcact
1141 gaaactggtt gaagggtgtt gcaccctttt gggcctagaa ttctgaactt tatctgttct
1201 gtttctgtgg gaggagaagg ggaagtatgt tttggggggc tgcttcctgt ctgagtaagc
1261 cctcaggagc ctctgctccc ctgtgaaccc actgaacctt ctgagccccc actgcttcta
1321 tggggctctc tcttctgcct tctcaggaaa gctggtgtct gattttggcc atcaggactc
1381 tgacgtctct ttggtcttgt tgatttcctc tgggcatatc ccttccccag atctgctcct
1441 cccctttcac aggtgggatc ggcactcagg gggtctggaa agaaggtcat aagggagcat
1501 gataggattt ggggcagagg gacaggctcc tctggggaaa ccccccagag ctctttacca
1561 aggatgaaag aggagccagg ccttgggctc ctgatgagga gaaaggggcc ccaccggggt
1621 ctaatggtga cagtccaaac cactccactg gcctcctggc agaagccgag tgtgctgggg
1681 tctccgaaga gggtccctcc tttttggggg aaggtcagcc cagcccctcc aaaggtctga
1741 tgtctccact ttcacccgca ggccttaccg ctctgtttat agtgacccac cctagatctt
1801 ccccaagagg gactggggtt tctggggtcc attctctgag tcagtggtta tttgaaaatt
1861 tgattttgat tttatttttt ctctgtaaac ttccaagctg gcttttccca tttcaattcc
1921 tgtgatttat gccaataaag tttgcccatg attttcaaaa aaaaaaaaaa aaaaaa
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