LOCUS BC003534 2854 bp mRNA linear HUM 27-SEP-2007
DEFINITION Homo sapiens ATPase, class I, type 8B, member 1, mRNA (cDNA clone
IMAGE:3609288), partial cds.
ACCESSION BC003534
VERSION BC003534.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2854)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2854)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 13 Row: o Column: 13.
FEATURES Location/Qualifiers
source 1..2854
/db_xref="H-InvDB:HIT000086248"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3609288"
/tissue_type="Uterus, endometrium adenocarcinoma"
/clone_lib="NIH_MGC_44"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2854
/gene="ATP8B1"
/gene_synonym="ATPIC"
/gene_synonym="PFIC"
/db_xref="GeneID:5205"
/db_xref="HGNC:HGNC:3706"
/db_xref="MIM:602397"
CDS <1..2684
/gene="ATP8B1"
/gene_synonym="ATPIC"
/gene_synonym="PFIC"
/codon_start=3
/product="ATP8B1 protein"
/protein_id="AAH03534.1"
/db_xref="GeneID:5205"
/db_xref="HGNC:HGNC:3706"
/db_xref="MIM:602397"
/translation="HAYWEAQVGNSSWYLYDGEDDTPSYRGFLIFWGYIIVLNTMVPI
SLYVSVEVIRLGQSHFINWDLQMYYAEKDTPAKARTTTLNEQLGQIHYIFSDKTGTLT
QNIMTFKKCCINGQIYGDHRDASQHNHNKIEQVDFSWNTYADGKLAFYDHYLIEQIQS
GKEPEVRQFFFLLAVCHTVMVDRTDGQLNYQAASPDEGALVNAARNFGFAFLARTQNT
ITISELGTERTYNVLAILDFNSDRKRMSIIVRTPEGNIKLYCKGADTVIYERLHRMNP
TKQETQDALDIFANETLRTLCLCYKEIEEKEFTEWNKKFMAASVASTNRDEALDKVYE
EIEKDLILLGATAIEDKLQDGVPETISKLAKADIKIWVLTGDKKETAENIGFACELLT
EDTTICYGEDINSLLHARMENQRNRGGVYAKFAPPVQESFFPPGGNRALIITGSWLNE
ILLEKKTKRNKILKLKFPRTEEERRMRTQSKRRLEAKKEQRQKNFVDLACECSAVICC
RVTPKQKAMVVDLVKRYKKAITLAIGDGANDVNMIKTAHIGVGISGQEGMQAVMSSDY
SFAQFRYLQRLLLVHGRWSYIRMCKFLRYFFYKNFAFTLVHFWYSFFNGYSAQTAYED
WFITLYNVLYTSLPVLLMGLLDQDVSDKLSLRFLGLYIVGQRDLLFNYKRFFVSLLHG
VLTSMILFFIPLGAYLQTVGQDGEAPSDYQSFAVTIASALVITVNFQIGLDTSYWTFV
NAFSIFGSIALYFGIMFDFHSAGIHVLFPSAFQFTGTASNALRQPYIWLTIILTVAVC
LLPVVAIRFLSMTIWPSESDKIQKHRKRLKAEEQWQRRQQVFRRGVSTRRSAYAFSHQ
RGYADLISSGRSIRKKRSPLDAIVADGTAEYRRTGDS"
BASE COUNT 812 a 661 c 662 g 719 t
ORIGIN
1 gccatgctta ttgggaagca caggtgggca attcctcttg gtacctctat gatggagaag
61 acgatacacc ctcctaccgt ggattcctca ttttctgggg ctatatcatt gttctcaaca
121 ccatggtacc catctctctc tatgtcagcg tggaagtgat tcgtcttgga cagagtcact
181 tcatcaactg ggacctgcaa atgtactatg ctgagaagga cacacccgca aaagctagaa
241 ccaccacact caatgaacag ctcgggcaga tccattatat cttctctgat aagacgggga
301 cactcacaca aaatatcatg acctttaaaa agtgctgtat caacgggcag atatatgggg
361 accatcggga tgcctctcaa cacaaccaca acaaaataga gcaagttgat tttagctgga
421 atacatatgc tgatgggaag cttgcatttt atgaccacta tcttattgag caaatccagt
481 cagggaaaga gccagaagta cgacagttct tcttcttgct cgcagtttgc cacacagtca
541 tggtggatag gactgatggt cagctcaact accaggcagc ctctcccgat gaaggtgccc
601 tggtaaacgc tgccaggaac tttggctttg ccttcctcgc caggacccag aacaccatca
661 ccatcagtga actgggcact gaaaggactt acaatgttct tgccattttg gacttcaaca
721 gtgaccggaa gcgaatgtct atcattgtaa gaaccccaga aggcaatatc aagctttact
781 gtaaaggtgc tgacactgtt atttatgaac ggttacatcg aatgaatcct actaagcaag
841 aaacacagga tgccctggat atctttgcaa atgaaactct tagaacccta tgcctttgct
901 acaaggaaat tgaagaaaaa gaatttacag aatggaataa aaagtttatg gctgccagtg
961 tggcctccac caaccgggac gaagctctgg ataaagtata tgaggagatt gaaaaagact
1021 taattctcct gggagctaca gctattgaag acaagctaca ggatggagtt ccagaaacca
1081 tttcaaaact tgcaaaagct gacattaaga tctgggtgct tactggagac aaaaaggaaa
1141 ctgctgaaaa tataggattt gcttgtgaac ttctgactga agacaccacc atctgctatg
1201 gggaggatat taattctctt cttcatgcaa ggatggaaaa ccagaggaat agaggtggcg
1261 tctacgcaaa gtttgcacct cctgtgcagg aatctttttt tccacccggt ggaaaccgtg
1321 ccttaatcat cactggttct tggttgaatg aaattcttct cgagaaaaag accaagagaa
1381 ataagattct gaagctgaag ttcccaagaa cagaagaaga aagacggatg cggacccaaa
1441 gtaaaaggag gctagaagct aagaaagagc agcggcagaa aaactttgtg gacctggcct
1501 gcgagtgcag cgcagtcatc tgctgccgcg tcacccccaa gcagaaggcc atggtggtgg
1561 acctggtgaa gaggtacaag aaagccatca cgctggccat cggagatggg gccaatgacg
1621 tgaacatgat caaaactgcc cacattggcg ttggaataag tggacaagaa ggaatgcaag
1681 ctgtcatgtc gagtgactat tcctttgctc agttccgata tctgcagagg ctactgctgg
1741 tgcatggccg atggtcttac ataaggatgt gcaagttcct acgatacttc ttttacaaaa
1801 actttgcctt tactttggtt catttctggt actccttctt caatggctac tctgcgcaga
1861 ctgcatacga ggattggttc atcaccctct acaacgtgct gtacaccagc ctgcccgtgc
1921 tcctcatggg gctgctcgac caggatgtga gtgacaaact gagcctccga ttccttgggt
1981 tatacatagt gggacaaaga gacttactat tcaactataa gagattcttt gtaagcttgt
2041 tgcatggggt cctaacatcg atgatcctct tcttcatacc tcttggagct tatctgcaaa
2101 ccgtagggca ggatggagag gcaccttccg actaccagtc ttttgccgtc accattgcct
2161 ctgctcttgt aataacagtc aatttccaga ttggcttgga tacttcttat tggacttttg
2221 tgaatgcttt ttcaattttt ggaagcattg cactttattt tggcatcatg tttgactttc
2281 atagtgctgg aatacatgtt ctctttccat ctgcatttca atttacaggc acagcttcaa
2341 acgctctgag acagccatac atttggttaa ctatcatcct gactgttgct gtgtgcttac
2401 tacccgtcgt tgccattcga ttcctgtcaa tgaccatctg gccatcagaa agtgataaga
2461 tccagaagca tcgcaagcgg ttgaaggcgg aggagcagtg gcagcgacgg cagcaggtgt
2521 tccgccgggg cgtgtcaacg cggcgctcgg cctacgcctt ctcgcaccag cggggctacg
2581 cggacctcat ctcctccggg cgcagcatcc gcaagaagcg ctcgccgctt gatgccatcg
2641 tggcggatgg caccgcggag tacaggcgca ccggggacag ctgatccctt acccccaggc
2701 tgggatgcgg ccacaaagca cgtctatttt tttatgaaag actctcagga ctttgtgtgt
2761 gtgtgtgaat tgcattcatc acaaagatat tgaagacaat aaataatctt tataacaaaa
2821 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
//