LOCUS BC003412 765 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens peptidylprolyl isomerase H (cyclophilin H), mRNA (cDNA
clone MGC:5016 IMAGE:3451034), complete cds.
ACCESSION BC003412
VERSION BC003412.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 765)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 765)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 3 Row: j Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 45439322.
FEATURES Location/Qualifiers
source 1..765
/db_xref="H-InvDB:HIT000031554"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:5016 IMAGE:3451034"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..765
/gene="PPIH"
/gene_synonym="CYP-20"
/gene_synonym="CYPH"
/gene_synonym="MGC5016"
/gene_synonym="SnuCyp-20"
/gene_synonym="USA-CYP"
/db_xref="GeneID:10465"
/db_xref="HGNC:HGNC:14651"
/db_xref="MIM:606095"
CDS 23..556
/gene="PPIH"
/gene_synonym="CYP-20"
/gene_synonym="CYPH"
/gene_synonym="MGC5016"
/gene_synonym="SnuCyp-20"
/gene_synonym="USA-CYP"
/codon_start=1
/product="peptidylprolyl isomerase H (cyclophilin H)"
/protein_id="AAH03412.1"
/db_xref="GeneID:10465"
/db_xref="HGNC:HGNC:14651"
/db_xref="MIM:606095"
/translation="MAVANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFR
QFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKL
RHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTG
PNNKPKLPVVISQCGEM"
BASE COUNT 199 a 156 c 200 g 210 t
ORIGIN
1 cttctgcttc cgggtcggag ccatggcggt ggcaaattca agtcctgtta accccgtggt
61 gttctttgat gtcagtattg gcggtcagga agttggccgc atgaagatcg agctctttgc
121 agacgttgtg cctaagacgg ccgagaactt taggcagttc tgcaccggag aattcaggaa
181 agatggggtt ccaataggat acaaaggaag caccttccac agggtcataa aggatttcat
241 gattcagggt ggagattttg ttaatggaga tggtactgga gtcgccagta tttaccgggg
301 gccatttgca gatgaaaatt ttaaacttag acactcagct ccaggcctgc tttccatggc
361 gaacagtggt ccaagtacaa atggctgtca gttctttatc acctgctcta agtgcgattg
421 gctggatggg aagcatgtgg tgtttggaaa aatcatcgat ggacttctag tgatgagaaa
481 gattgagaat gttcccacag gccccaacaa taagcccaag ctacctgtgg tgatctcgca
541 gtgtggggag atgtagtcca gacaaagact gaatcaggcc ttcccttctt cttggtggtg
601 ttcttgagta agataatctg gactggcccc cgtctttgct tccctgcctg ctgctgcccc
661 atttgatcaa gagaccatgg aagtgtcaga gattcagaat ccaagattgt ctttaagttt
721 tcaactgtaa ataaagtttt tttgtatgcg taaaaaaaaa aaaaa
//