LOCUS BC003389 2164 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens signal recognition particle 54kDa, mRNA (cDNA clone
MGC:5284 IMAGE:3446599), complete cds.
ACCESSION BC003389
VERSION BC003389.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2164)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2164)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 3 Row: g Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 20149548.
FEATURES Location/Qualifiers
source 1..2164
/db_xref="H-InvDB:HIT000031539"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:5284 IMAGE:3446599"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2164
/gene="SRP54"
/db_xref="GeneID:6729"
/db_xref="HGNC:HGNC:11301"
/db_xref="MIM:604857"
CDS 225..1739
/gene="SRP54"
/codon_start=1
/product="signal recognition particle 54kDa"
/protein_id="AAH03389.1"
/db_xref="GeneID:6729"
/db_xref="HGNC:HGNC:11301"
/db_xref="MIM:604857"
/translation="MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADV
NIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQN
VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFY
GSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIV
YVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTG
EHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYE
QFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDG
AKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNV
SQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQFQQGAAGNMKGMMGFNNM"
BASE COUNT 687 a 366 c 487 g 624 t
ORIGIN
1 cttccagctg gtgggagttg acgacgtggt gctgggcgtt gggaccctac tttatctagt
61 tcgggaagtt gggttgtggg gtcatacctg tctgtctgct cccagctttc ttgggtttct
121 tccgacggcg tggggcctcg ctaaggaatt cccggcccct cagggccacg gctttagcgg
181 tgtcttttgc gagttcttcg taagtacatc ttaaagctgt caagatggtt ctagcagacc
241 ttggaagaaa aataacatca gcattacgct cattgagcaa tgccaccatt atcaatgaag
301 aggtattgaa tgctatgcta aaagaagtct gtaccgcttt gttggaagca gatgttaata
361 ttaaactagt gaagcaacta agagaaaatg ttaagtctgc tattgatctt gaagagatgg
421 catctggtct taacaaaaga aaaatgattc agcatgctgt atttaaagaa cttgtgaagc
481 ttgtagaccc tggagttaag gcatggacac ccactaaagg aaaacaaaat gtgattatgt
541 ttgttggatt gcaagggagt ggtaaaacaa caacatgttc aaagctagca tattattacc
601 agaggaaagg ttggaagacc tgtttaatat gtgcagacac attcagagca ggggcttttg
661 accaactaaa acagaatgct accaaagcaa gaattccatt ttatggaagc tatacagaaa
721 tggatcctgt catcattgct tctgaaggag tagagaaatt taaaaatgaa aattttgaaa
781 ttattattgt tgatacaagt ggccgccaca aacaagaaga ctctttgttt gaagaaatgc
841 ttcaagttgc taatgctata caacctgata acattgttta tgtgatggat gcctccattg
901 ggcaggcttg tgaagcccag gctaaggctt ttaaagataa agtagatgta gcctcagtaa
961 tagtgacaaa acttgatggc catgcaaaag gaggtggtgc actcagtgca gtcgctgcca
1021 caaaaagtcc gattattttc attggtacag gggaacatat agatgacttt gaacctttca
1081 aaacacagcc ttttattagc aaacttcttg gtatgggcga cattgaagga ctgatagata
1141 aagtcaacga gttgaagttg gatgacaatg aagcacttat agagaagttg aaacatggtc
1201 agtttacgtt gcgagacatg tatgagcaat ttcaaaatat catgaaaatg ggccccttca
1261 gtcagatctt ggggatgatc cctggttttg ggacagattt tatgagcaaa ggaaatgaac
1321 aggagtcaat ggcaaggcta aagaaattaa tgacaataat ggatagtatg aatgatcaag
1381 aactagacag tacggatggt gccaaagttt ttagtaaaca accaggaaga atccaaagag
1441 tagcaagagg atcgggtgta tcaacaagag atgttcaaga acttttgaca caatatacca
1501 agtttgcaca gatggtaaaa aagatgggag gtatcaaagg acttttcaaa ggtggcgaca
1561 tgtctaagaa tgtgagccag tcacagatgg caaaattgaa ccaacaaatg gccaaaatga
1621 tggatcctag ggttcttcat cacatgggtg gtatggcagg acttcagtca atgatgaggc
1681 agtttcaaca gggtgctgct ggcaacatga aaggcatgat gggattcaat aatatgtaaa
1741 gaaaatgcct taatataaac tgactcagtt gaatacctaa tttgctgaga cctcagcgtt
1801 tcccttcttt ttgcgaattg gggggaaagt gtatttttct tgcttatcat gcactctttc
1861 cttttcttct cgcccgcttt tcccctcctt ttctttttcc ttccttcttt cctcccttta
1921 atataaggga gaaatacatg gtttttgtgg aaatcattat atgtttgctt tagattttct
1981 tctgttttca ccatcataac acttaagtta aatcatgatg taaaatttta gtacttaaag
2041 gtttttaatt atctcgaagg ccaagcattg catttgtaaa cagtcctggt cagtagttaa
2101 ataatgtttc aattaaagtg ctgtaaaata aacttcaaag tggttataaa aaaaaaaaaa
2161 aaaa
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