LOCUS BC003385 1615 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens speckle-type POZ protein, mRNA (cDNA clone MGC:5381
IMAGE:3445878), complete cds.
ACCESSION BC003385
VERSION BC003385.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1615)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1615)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 3 Row: i Column: 4.
FEATURES Location/Qualifiers
source 1..1615
/db_xref="H-InvDB:HIT000031536"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:5381 IMAGE:3445878"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1615
/gene="SPOP"
/gene_synonym="TEF2"
/db_xref="GeneID:8405"
/db_xref="HGNC:HGNC:11254"
/db_xref="MIM:602650"
CDS 115..1239
/gene="SPOP"
/gene_synonym="TEF2"
/codon_start=1
/product="speckle-type POZ protein"
/protein_id="AAH03385.1"
/db_xref="GeneID:8405"
/db_xref="HGNC:HGNC:11254"
/db_xref="MIM:602650"
/translation="MSRVPSPPPPAEMSSGPVAESWCYTQIKVVKFSYMWTINNFSFC
REEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKF
KFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCE
VSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAIL
AARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAA
ADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLE
TSGWKSMVVSHPHLVAEAYRSLASAQCPFLGPPRKRLKQS"
BASE COUNT 432 a 356 c 434 g 393 t
ORIGIN
1 ggcaagcgca gggggacggg gaccagcagc tgtcgccgcc gctctcaggg tgaagaggga
61 acagaaatct ttgccccctg actttggaaa tctcgtttaa ccttcaaact ggcgatgtca
121 agggttccaa gtcctccacc tccggcagaa atgtcgagtg gccccgtagc tgagagttgg
181 tgctacacac agatcaaggt agtgaaattc tcctacatgt ggaccatcaa taactttagc
241 ttttgccggg aggaaatggg tgaagtcatt aaaagttcta cattttcatc aggagcaaat
301 gataaactga aatggtgttt gcgagtaaac cccaaagggt tagatgaaga aagcaaagat
361 tacctgtcac tttacctgtt actggtcagc tgtccaaaga gtgaagttcg ggcaaaattc
421 aaattctcca tcctgaatgc caagggagaa gaaaccaaag ctatggagag tcaacgggca
481 tataggtttg tgcaaggcaa agactgggga ttcaagaaat tcatccgtag agattttctt
541 ttggatgagg ccaacgggct tctccctgat gacaagctta ccctcttctg cgaggtgagt
601 gttgtgcaag attctgtcaa catttctggc cagaatacca tgaacatggt aaaggttcct
661 gagtgccggc tggcagatga gttaggagga ctgtgggaga attcccggtt cacagactgc
721 tgcttgtgtg ttgccggcca ggaattccag gctcacaagg ctatcttagc agctcgttct
781 ccggttttta gtgccatgtt tgaacatgaa atggaggaga gcaaaaagaa tcgagttgaa
841 atcaatgatg tggagcctga agtttttaag gaaatgatgt gcttcattta cacggggaag
901 gctccaaacc tcgacaaaat ggctgatgat ttgctggcag ctgctgacaa gtatgccctg
961 gagcgcttaa aggtcatgtg tgaggatgcc ctctgcagta acctgtccgt ggagaacgct
1021 gcagaaattc tcatcctggc cgacctccac agtgcagatc agttgaaaac tcaggcagtg
1081 gatttcatca actatcatgc ttcggatgtc ttggagacct ctgggtggaa gtcaatggtg
1141 gtgtcacatc cccacttggt ggctgaggca taccgctctc tggcttcagc acagtgccct
1201 tttctgggac ccccacgcaa acgcctgaag caatcctaag atcctgcttg ttgtaagact
1261 ccgtttaatt tccagaagca gcagccactg ttgctgccac tgaccaccag gtagacagcg
1321 caatctgtgg agcttttact ctgttgtgag gggaagagac tgcattgtgg ccccagactt
1381 ttaaaacagc actaaataac ttgggggaaa cggggggagg gaaaatgaaa tgaaaaccct
1441 gttgctgcgt cactgtgttc cctttggcct ggctgagttt gatactgtgg ggattcagtt
1501 taggcgctgg cccgaggata tcccagcggt ggtacttcgg agacacctgt ctgcatctga
1561 ctgagcagaa caaatcgtca ggtgcctgga gcaaaaagga aaaaaaaaaa aaaaa
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