LOCUS BC003357 934 bp mRNA linear HUM 30-JAN-2008
DEFINITION Homo sapiens HD domain containing 2, mRNA (cDNA clone
IMAGE:2900167).
ACCESSION BC003357
VERSION BC003357.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 934)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 934)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 3 Row: o Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7705623.
FEATURES Location/Qualifiers
source 1..934
/db_xref="H-InvDB:HIT000031512"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:2900167"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..934
/gene="HDDC2"
/gene_synonym="CGI-130"
/gene_synonym="dJ167O5.2"
/gene_synonym="NS5ATP2"
/db_xref="GeneID:51020"
/db_xref="HGNC:HGNC:21078"
CDS <1..658
/gene="HDDC2"
/gene_synonym="CGI-130"
/gene_synonym="dJ167O5.2"
/gene_synonym="NS5ATP2"
/codon_start=2
/product="HD domain containing 2"
/protein_id="AAH03357.2"
/db_xref="GeneID:51020"
/db_xref="HGNC:HGNC:21078"
/translation="LRRGLLRPAGVGGRMASVSSATFSGHGARSLLQFLRLVGQLKRV
PRTGWVYRNVQRPESVSDHMYRMAVMAMVIKDDRLNKDRCVRLALVHDMAECIVGDIA
PADNIPKEEKHRREEEAMKQITQLLPEDLRKELYELWEEYETQSSAEAKFVKQLDQCE
MILQASEYEDLEHKPGRLQDFYDSTAGKFNHPEIVQLVSELEAERSTNIAAAASEPHS
"
BASE COUNT 279 a 213 c 226 g 216 t
ORIGIN
1 gcttcgccgc ggcctgctcc gcccagccgg ggtcggtggc cgcatggctt cggtctcctc
61 tgcgaccttc tcgggccacg gggctcggtc cctactgcag ttcctgcggc tggtagggca
121 gctcaagaga gtcccacgaa ctggctgggt atacagaaat gtccagaggc cggagagcgt
181 ttcagatcac atgtaccgga tggcagttat ggctatggtg atcaaagatg accgtcttaa
241 caaagaccga tgtgtacgcc tagccctggt tcatgatatg gcagaatgca tcgttgggga
301 catagcacca gcagataaca tccccaaaga agaaaaacat aggcgagaag aggaagctat
361 gaagcagata acccagctcc taccagagga cctcagaaag gagctctatg aactttggga
421 agagtacgag acccaatcta gtgcagaagc caaatttgtg aagcagctag accaatgtga
481 aatgattctt caagcatctg aatatgaaga ccttgaacac aaacctggga gactgcaaga
541 cttctatgat tccacagcag gaaaattcaa tcaccctgag atagtccagc ttgtttctga
601 acttgaggca gaaagaagca ctaacatagc tgcagctgcc agtgagccac actcctgaga
661 cactctctaa attgctgcac tcctgtaaca aacattattt ttccatttca ttgtattgtg
721 ttttgccatt gttggtctgt tgatttccct agatgtgagt ctgtttgttt tcaattgtct
781 gaacttcagc aagaaatgtg atacaacttg ggcactaaaa gaagccacag aacaggaagc
841 ggtcatgaaa gtgccatgga tgaacactgg aggtggcagt gcctgtttat gaactaaata
901 aataaatatt aaacacctaa aaaaaaaaaa aaaa
//