LOCUS BC003190 793 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens nerve growth factor receptor (TNFRSF16) associated
protein 1, mRNA (cDNA clone MGC:802 IMAGE:3357965), complete cds.
ACCESSION BC003190
VERSION BC003190.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 793)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 793)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 6 Row: k Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 46094059.
FEATURES Location/Qualifiers
source 1..793
/db_xref="H-InvDB:HIT000031503"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:802 IMAGE:3357965"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..793
/gene="NGFRAP1"
/gene_synonym="Bex"
/gene_synonym="BEX3"
/gene_synonym="DXS6984E"
/gene_synonym="HGR74"
/gene_synonym="NADE"
/db_xref="GeneID:27018"
/db_xref="HGNC:HGNC:13388"
/db_xref="MIM:300361"
CDS 196..531
/gene="NGFRAP1"
/gene_synonym="Bex"
/gene_synonym="BEX3"
/gene_synonym="DXS6984E"
/gene_synonym="HGR74"
/gene_synonym="NADE"
/codon_start=1
/product="nerve growth factor receptor (TNFRSF16)
associated protein 1"
/protein_id="AAH03190.1"
/db_xref="GeneID:27018"
/db_xref="HGNC:HGNC:13388"
/db_xref="MIM:300361"
/translation="MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLA
PNFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHD
HHDEFCLMP"
BASE COUNT 225 a 170 c 205 g 193 t
ORIGIN
1 gtgcagtcgt cactcgcgtc tggctaccag ctccccgctg ccctgagctc ggcgggctgg
61 cattcggccc ggggaaaagc ggagcaggtc tgcgaggcta agtgtctccg cggcgcacct
121 cgcggcgaga atccggagga gaaggagact gcaaggatag gcccagaaaa acaaccagaa
181 aaaaaaaatc tcatcatggc aaatattcac caggaaaacg aagagatgga gcagcctatg
241 cagaatggag aggaagaccg ccctttggga ggaggtgaag gccaccagcc tgcaggaaat
301 cgacggggac aggctcgccg acttgcccct aattttcgat gggccatacc caataggcag
361 atcaatgatg ggatgggtgg agatggagat gatatggaaa tattcatgga ggagatgaga
421 gaaatcagaa gaaaacttag ggagctgcag ttgaggaatt gtctgcgtat ccttatgggg
481 gagctctcta atcaccatga ccatcatgat gaattttgcc ttatgccttg actcctgcca
541 tttatcatga gattaatact gtgattcccg ctgttttctt tttccttgca ttttcctaat
601 atgcctttac tgatccgttt gctgtgaacc ctatgttatt tccatgtgtc aagtgggtct
661 tgtgttgcca gcttctattt gaagattgcc tttgcactca gtgtaagttt ctgtcagcag
721 tagtttcacc catttgcatg gaaaaattta aagctaataa agcaatttaa aaagcaaaaa
781 aaaaaaaaaa aaa
//