LOCUS BC003180 1345 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens small nuclear ribonucleoprotein polypeptide N, mRNA (cDNA clone MGC:4420 IMAGE:2958068), complete cds. ACCESSION BC003180 VERSION BC003180.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1345) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1345) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (13-FEB-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 9 Row: p Column: 14 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 29540556. FEATURES Location/Qualifiers source 1..1345 /db_xref="H-InvDB:HIT000031494" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:4420 IMAGE:2958068" /tissue_type="Kidney, renal cell adenocarcinoma" /clone_lib="NIH_MGC_14" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1345 /gene="SNRPN" /gene_synonym="HCERN3" /gene_synonym="RT-LI" /gene_synonym="SM-D" /gene_synonym="SMN" /gene_synonym="SNRNP-N" /gene_synonym="SNURF-SNRPN" /db_xref="GeneID:6638" /db_xref="HGNC:HGNC:11164" /db_xref="MIM:182279" CDS 467..1189 /gene="SNRPN" /gene_synonym="HCERN3" /gene_synonym="RT-LI" /gene_synonym="SM-D" /gene_synonym="SMN" /gene_synonym="SNRNP-N" /gene_synonym="SNURF-SNRPN" /codon_start=1 /product="small nuclear ribonucleoprotein polypeptide N" /protein_id="AAH03180.1" /db_xref="GeneID:6638" /db_xref="HGNC:HGNC:11164" /db_xref="MIM:182279" /translation="MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCD CDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAG GPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATAS IAGAPTQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPP GMRPPPPGIRGPPPPGMRPPRP" BASE COUNT 344 a 343 c 359 g 299 t ORIGIN 1 aattcggcac agggccgccg gagatgcctg acgcatctgt ctgaggagcg gtcagtgacg 61 cgatggagcg ggcaagggat cgcttacacc tgagacgaac tacagaacag cacgtaccag 121 aggtggaagt ccaagtcaaa cgcagaagga ctgcctcact gagcaaccaa gagtgtcagt 181 tgtacccgag gcgttctcag cagcagcaag tacctgtggt ggatttccag gctgaactga 241 ggcaggcatt cttagctgag acaccaagag gtggttaaag ccatattgga gtagcgagga 301 atctgattcc aagcaaaaac caggctccat ctactctttg aagcttctgc ccagcttgca 361 ttgtttctag gagaacccgc gtcatacctt tatctatagc cttcccctag gtcttcagaa 421 gcatcaagtt ttaactgtgg acattggatt tggtggaaca gcaatcatga ctgttggcaa 481 gagtagcaag atgctgcagc acattgacta tagaatgaga tgtatcctgc aagatggccg 541 aatcttcatt ggcaccttta aggcttttga caagcatatg aatttgatcc tctgtgattg 601 tgatgagttc agaaagatca agccaaagaa tgcgaagcaa ccagagcgtg aagaaaagcg 661 ggttttgggt ctggtgttgc tgcgtgggga gaacttggta tccatgactg tggaggggcc 721 accccccaaa gatactggca ttgctcgggt accacttgct ggagctgctg gaggccctgg 781 ggttggtagg gcagctggta gaggagtacc agctggtgtg ccaattcccc aggcccctgc 841 tggattggca ggccctgtcc gaggagttgg gggaccatcc cagcaggtaa tgactccaca 901 gggaagaggc actgtagcag ctgctgctgt tgctgcgact gccagtattg ctggagcccc 961 aacacagtac ccaccaggac ggggcactcc gcccccaccc gtcggcagag caaccccacc 1021 tccaggcatt atggctcctc cacctggtat gagaccaccc atgggcccac caattgggct 1081 tccccctgct cgagggacgc caataggcat gccgcctccg ggaatgagac cccctccacc 1141 aggcattaga ggtccacctc ccccaggaat gcgtccacca agaccttagc atactgttga 1201 tccatctcag tcactttttc ccctgcaatg cgtcttgtga aattgtgtag agtgtttgtg 1261 agctttttgt tccctcattc tgcattaata atagctaata ataaatgcat agagcaatta 1321 aactgtgaaa aaaaaaaaaa aaaaa //