LOCUS BC003177 2935 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens calcium binding and coiled-coil domain 1, mRNA (cDNA
clone MGC:4414 IMAGE:2957946), complete cds.
ACCESSION BC003177
VERSION BC003177.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2935)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2935)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: b Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14149741.
FEATURES Location/Qualifiers
source 1..2935
/db_xref="H-InvDB:HIT000031491"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4414 IMAGE:2957946"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2935
/gene="CALCOCO1"
/gene_synonym="calphoglin"
/gene_synonym="Cocoa"
/gene_synonym="KIAA1536"
/gene_synonym="PP13275"
/db_xref="GeneID:57658"
/db_xref="HGNC:HGNC:29306"
CDS 52..2127
/gene="CALCOCO1"
/gene_synonym="calphoglin"
/gene_synonym="Cocoa"
/gene_synonym="KIAA1536"
/gene_synonym="PP13275"
/codon_start=1
/product="calcium binding and coiled-coil domain 1"
/protein_id="AAH03177.1"
/db_xref="GeneID:57658"
/db_xref="HGNC:HGNC:29306"
/translation="MEESPLSRAPSRGGVNFLNVARTYIPNTKVECHYTLPPGTMPSA
SDWIGIFKVEAACVRDYHTFVWSSVPESTTDGSPIHTSVQFQASYLPKPGAQLYQFRY
VNRQGQVCGQSPPFQFREPRPMDELVTLEEADGGSDILLVVPKATVLQNQLDESQQER
NDLMQLKLQLEGQVTELRSRVQELERALATARQEHTELMEQYKGISRSHGEITEERDI
LSRQQGDHVARILELEDDIQTISEKVLTKEVELDRLRDTVKALTREQEKLLGQLKEVQ
ADKEQSEAELQVAQQENHHLNLDLKEAKSWQEEQSAQAQRLKDKVAQMKDTLGQAQQR
VAELEPLKEQLRGAQELAASSQQKATLLGEELASAAAARDRTIAELHRSRLEVAEVNG
RLAELGLHLKEEKCQWSKERAGLLQSVEAEKDKILKLSAEILRLEKAVQEERTQNQVF
KTELAREKDSSLVQLSESKRELTELRSALRVLQKEKEQLQEEKQELLEYMRKLEARLE
KVADEKWNEDATTEDEEAAVGLSCPAALTDSEDESPEDMRLPPYGLCERGDPGSSPAG
PREASPLVVISQPAPISPHLSGPAEDSSSDSEAEDEKSVLMAAVQSGGEEANLLLPEL
GSAFYDMASGFTVGTLSETSTGGPATPTWKECPICKERFPAESDKDALEDHMDGHFFF
STQDPFTFE"
BASE COUNT 723 a 781 c 827 g 604 t
ORIGIN
1 gaggggaaca gctgatccgt ctgttgggag gacagatatc tcaaggccag gatggaagaa
61 tcaccactaa gccgggcacc atcccgtggt ggagtcaact ttctcaatgt agcccggacc
121 tacatcccca acaccaaggt ggaatgtcac tacacccttc ccccaggcac catgcccagt
181 gccagtgact ggattggcat cttcaaggtg gaggctgcct gtgttcggga ttaccacaca
241 tttgtgtggt cttccgtgcc tgaaagtaca actgatggtt cccccattca caccagtgtc
301 cagttccaag ccagctacct gcccaaacca ggagctcagc tctaccagtt ccgatatgtg
361 aaccgccagg gccaggtgtg tgggcagagc ccccctttcc agttccgaga gccaaggccc
421 atggatgaac tggtgaccct ggaggaggct gatgggggct ctgacatcct gctggttgtc
481 cccaaggcaa ctgtgttaca gaaccagctc gatgagagcc agcaagaacg gaatgacctg
541 atgcagctga agctacagct ggagggacag gtgacagagc tgaggagccg agtgcaggag
601 ctcgagaggg ctctggcaac tgccaggcag gagcacacgg agctgatgga acagtacaag
661 gggatttccc ggtcccatgg ggagatcaca gaagagaggg acatcctgag ccggcaacag
721 ggagaccatg tggcacgcat cctggagcta gaggatgaca tccagaccat cagtgagaaa
781 gtgctgacga aggaagtgga gctggacagg cttagagaca cagtgaaggc cctgactcgg
841 gaacaagaga agctccttgg gcaactgaaa gaagtacaag cagacaagga gcaaagtgag
901 gctgagctcc aagtggcaca acaggagaac catcacttaa atttggacct gaaggaggcg
961 aagagctggc aagaggagca gagtgctcag gctcagcgac tgaaagacaa ggtggcccag
1021 atgaaggaca ccctaggcca ggcccagcag cgggtggccg agctggagcc cttgaaggag
1081 cagcttcgag gggcccagga gcttgcagcc tcaagccagc agaaagccac ccttcttggg
1141 gaggagttgg ccagtgcagc agcagccagg gaccgcacca tagccgaact acaccgcagc
1201 cgcctggaag tggctgaagt taacggcagg ctggctgagc tcggtttgca cttgaaggaa
1261 gaaaaatgcc aatggagcaa ggagcgggca gggctgctgc agagtgtgga ggcagagaag
1321 gacaagatcc tgaagctgag tgcagagata cttcgattgg agaaggcagt tcaggaggag
1381 aggacccaaa accaagtgtt caagactgag ctggcccggg agaaggattc tagcctggta
1441 cagttgtcag aaagtaagcg ggagctgaca gagctgcggt cagccctgcg tgtgctccag
1501 aaggaaaagg agcagttaca ggaggagaaa caggaattgc tagagtacat gagaaagcta
1561 gaggcccgcc tggagaaggt ggcagatgag aagtggaatg aggatgccac cacagaggat
1621 gaggaggccg ctgtggggct gagctgcccg gcagctctga cagactcaga ggacgagtcc
1681 ccagaagaca tgaggctccc accctatggc ctttgtgagc gtggagaccc aggctcctct
1741 cctgctgggc ctcgagaggc ttctcccctt gttgtcatca gccagccggc tcccatttct
1801 cctcacctct ctgggccagc tgaggacagt agctctgact cggaggctga agatgagaag
1861 tcagtcctga tggcagctgt gcagagtggg ggtgaggagg ccaacttact gcttcctgaa
1921 ctgggcagtg ccttctatga catggccagt ggctttacag tgggtaccct gtcagaaacc
1981 agcactgggg gccctgccac ccccacatgg aaggagtgtc ctatctgtaa ggagcgcttt
2041 cctgctgaga gtgacaagga tgccctggag gaccacatgg atggacactt ctttttcagc
2101 acccaggacc ccttcacctt tgagtgatct tactccctcg tacatgcaca aatacacact
2161 catgcacaca cacactcaca cacatgcata cacttaggtt tcatgcccat tttctatcac
2221 actgggctcc atgatattct gttccctaag aactgcttct gtgtgccctg ttttcatccc
2281 aagatttctc acttcatcct ctcctacctg gctcttttgt cccagggagg ggtcctgttc
2341 ggaagcagtg gctgaattta tcccctgaaa gtggttttgg aggaaccggg atggaggagg
2401 ccttcccctg tgggaataga atcgtccact cctagccctg gttgcttctg atacacagcc
2461 actgcacaca cacactcaca ctcacactcc cttgtctgat gccccaaagc caattcctgg
2521 ggcaccctac cctctcttat ttggagtttc cgttggttta cctgagtttt ctctggggtc
2581 tgcacagagg cagcagcatg gacatcatgg cctctcaggt cccttttggt tctcagtttc
2641 attggttcct ctttctgttc ccccattgac ttctgtgccc caccctagcc ttttccataa
2701 ccttaggtat tcagtttgga ggggtttttt gtatttttga ggattcctgt attctgtatc
2761 ctctcctcgc atctcctcac atggaaagaa ataatgtatt tgtgccttct gtgaggaatg
2821 gggggaacaa gtggtcccag gtatccccat ttccaaggcc cccctccctc tccaggtccc
2881 cccacagcaa taaaagcttc cccctgatat ccaaaaaaaa aaaaaaaaaa aaaaa
//