LOCUS BC003174 1499 bp mRNA linear HUM 01-FEB-2005
DEFINITION Homo sapiens core 1 synthase, glycoprotein-N-acetylgalactosamine
3-beta-galactosyltransferase, 1, mRNA (cDNA clone IMAGE:2957836),
partial cds.
ACCESSION BC003174
VERSION BC003174.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1499)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1499)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (13-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: l Column: 10.
FEATURES Location/Qualifiers
source 1..1499
/db_xref="H-InvDB:HIT000086223"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:2957836"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1499
/gene="C1GALT1"
/gene_synonym="C1GALT"
/gene_synonym="T-synthase"
/db_xref="GeneID:56913"
CDS <1..859
/gene="C1GALT1"
/gene_synonym="C1GALT"
/gene_synonym="T-synthase"
/codon_start=2
/product="C1GALT1 protein"
/protein_id="AAH03174.1"
/db_xref="GeneID:56913"
/translation="IAENLYQKVRILCWVMTGPQNLEKKAKHVKATWAQRCNKVLFMS
SEENKDFPAVGLKTKEGRDQLYWKTIKAFQYVHEHYLEDADWFLKADDDTYVILDNLR
WLLSKYDPEEPIYFGRRFKPYVKQGYMSGGAGYVLSKEALKRFVDAFKTDKCTHSSSI
EDLALGRCMEIMNVEAGDSRDTIGKETFHPFVPEHHLIKGYLPRTFWYWNYNYYPPVE
GPGCCSDLAVSFHYVDSTTMYELEYLVYHLRPYGYLYRYQPTLPERILKEISQANKNE
DTKVKLGNP"
BASE COUNT 533 a 245 c 281 g 440 t
ORIGIN
1 cattgctgaa aacctctatc agaaagttag aattctttgc tgggttatga ccggccctca
61 aaacctagag aaaaaggcca aacacgtcaa agctacttgg gcccagcgtt gtaacaaagt
121 gttgtttatg agttcagaag aaaataaaga cttccctgct gtgggactga aaaccaaaga
181 aggcagagat caactatact ggaaaacaat taaagctttt cagtatgttc atgaacatta
241 tttagaagat gctgattggt ttttgaaagc agatgatgac acgtatgtca tactagacaa
301 tttgaggtgg cttctttcaa aatacgaccc tgaagaaccc atttactttg ggagaagatt
361 taagccttat gtaaagcagg gctacatgag tggaggagca ggatatgtac taagcaaaga
421 agccttgaaa agatttgttg atgcatttaa aacagacaag tgtacacata gttcctccat
481 tgaagactta gcactgggga gatgcatgga aattatgaat gtagaagcag gagattccag
541 agataccatt ggaaaagaaa cttttcatcc ctttgtgcca gaacaccatt taattaaagg
601 ttatctacct agaacgtttt ggtactggaa ttacaactat tatcctcctg tagagggtcc
661 tggttgctgc tctgatcttg cagtttcttt tcactatgtt gattctacaa ccatgtatga
721 gttagaatac ctcgtttatc atcttcgtcc atatggttat ttatacagat atcaacctac
781 cttacctgaa cgtatactaa aggaaattag tcaagcaaac aaaaatgaag atacaaaagt
841 gaagttagga aatccttgaa agaaaatcat gaatgaacaa aggtaatatg tctagcactg
901 cactgaaaaa ggacttctgc atttctgaca tagaacactg gaatcccagt gaggaattct
961 aagtgaacat tccttataga aacctttcac atgaatgact ataaactgaa gctttaaatg
1021 agctgtgaag tgtgttaaaa tgtgttttga tacagtaata tataaatata tctatatata
1081 tgaggaactt gtgtttttta aatggtggcc aggtagagga actagaaaag agattttgtt
1141 gcctgttttc tgaccatctg tgttattgtc actgagaaac taaaatagta aatttactaa
1201 aactacactg caccatgtta gtaataaaca gatctgcctt aaagaaaaga aaattttaga
1261 aagaaatatt gttgctcagt gttgttaata tagctcaaga attgagttta tatttgcagt
1321 atgctataaa tgataccccc ctaccacacc cacacacaca gtttttgtct aatgaaaatg
1381 ttgctgtgat tatttataat tggtagtatt tcttccagaa gaagctaaaa taagactggc
1441 acttaccctg aagtgcatta ataaaaccac actttaaaat taaaaaaaaa aaaaaaaaa
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