LOCUS BC003173 2483 bp mRNA linear HUM 26-APR-2004
DEFINITION Homo sapiens phosphofurin acidic cluster sorting protein 1, mRNA
(cDNA clone IMAGE:2924227), partial cds.
ACCESSION BC003173
VERSION BC003173.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2483)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2483)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (13-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: j Column: 10.
FEATURES Location/Qualifiers
source 1..2483
/db_xref="H-InvDB:HIT000258900"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:2924227"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2483
/gene="PACS1"
/gene_synonym="FLJ10209"
/gene_synonym="KIAA1175"
/db_xref="GeneID:55690"
/db_xref="MIM:607492"
CDS <1..995
/gene="PACS1"
/gene_synonym="FLJ10209"
/gene_synonym="KIAA1175"
/codon_start=3
/product="PACS1 protein"
/protein_id="AAH03173.1"
/db_xref="GeneID:55690"
/db_xref="MIM:607492"
/translation="YLSSILRFFVKSLANKTSDWLGYMRFLIIPLGSHPVAKYLGSVD
SKYSSSFLDSGWRDLFSRSEPPVSEQLDVAGRVMQYVNGAATTHQLPVAEAMLTCRHK
FPDEDSYQKFIPFIGVVKVGLVEDSPSTAGDGDDSPVVSLTVPSTSPPSSSGLSRDAT
ATPPSSPSMSSALAIVGSPNSPYGDVIGLQVDYWLGHPGERRREGDKRDASSKNTLKS
VFRSVQVSRLPHSGEAQLSGTMAMTVVTKEKNKKVPTIFLSKKPREKEVDSKSQVIEG
ISRLICSAKQQQTMLRVSIDGVEWSDIKFFQLAAQWPTHVKHFPVGLFSGSKAT"
BASE COUNT 468 a 868 c 596 g 551 t
ORIGIN
1 gctacctgag ctccatcctc aggttctttg tcaagtccct ggccaacaag acctccgact
61 ggcttggcta catgcgcttc ctcatcatcc ccctcggttc tcaccctgtg gccaaatact
121 tggggtcagt cgacagtaaa tacagtagtt ccttcctgga ttctggttgg agagatctgt
181 tcagtcgctc ggagccacca gtgtcagagc aactggacgt ggcagggcgg gtgatgcagt
241 acgtcaacgg ggcagccacg acacaccagc ttcccgtggc cgaagccatg ctgacttgcc
301 ggcataagtt ccctgatgaa gactcctatc agaagtttat tcccttcatt ggcgtggtga
361 aggtgggtct ggttgaagac tctccctcca cagcaggcga tggggacgat tctcctgtgg
421 tcagccttac tgtgccctcc acatcaccac cctccagctc gggcctgagc cgagacgcca
481 cggccacccc tccctcctcc ccatctatga gcagcgccct ggccatcgtg gggagcccta
541 atagcccata tggggacgtg attggcctcc aggtggacta ctggctgggc caccccgggg
601 agcggaggag ggaaggcgac aagagggacg ccagctcgaa gaacaccctc aagagtgtct
661 tccgctcagt gcaggtgtcc cgcctgcccc atagtgggga ggcccagctt tctggcacca
721 tggccatgac tgtggtcacc aaagaaaaga acaagaaagt tcccaccatc ttcctgagca
781 agaaaccccg agaaaaggag gtggattcta agagccaggt cattgaaggc atcagccgcc
841 tcatctgctc agccaagcag cagcagacta tgctgagagt gtccatcgat ggggtcgagt
901 ggagtgacat caagttcttc cagctggcag cccagtggcc cacccatgtc aagcactttc
961 cagtgggact cttcagtggc agcaaggcca cctgaggccc tgtctcccag ccactttccc
1021 tcctggcact gccaccagcc tcaccgcctg cgggcagggg gaggccagca ggcccgggcc
1081 cagcacccct tccctggcac cagggtctgc ctctcactcg cccaggtccc gaaggacact
1141 gccacaggga cgccttccct cccctcccct ccagcccacc cctgcacagc ccctcctcct
1201 tcccgctttt ccccttctcc ctcctgctcc aggcccaagg cgtgttggtt ttgccttctg
1261 gtgcccatag tcccctggac tgagtccccc aggccttcct tcacccgact tccaaactct
1321 tccttgtggt atcagtttcc ttctcggaaa tgagaaagct ggaatcctgg tccccagcag
1381 gagagcctag tcctccccca gcccctccag ccaccagggt gtcctctagg atgcagctgc
1441 cagatccact cactctgctg cctccagcag gacccaaggc cactttcaac tcttatgggg
1501 ttctccacct gccccagagc ttctcaaggg agggtaaggg ggcaccctga gcccacagga
1561 cccctacttc acagctcaca ggggcaggag gcagctcccc tgcctccagg accctgttgc
1621 tatggtgaca cagcgtttct aggacagagg ggcctcccag tctcccccca ccacccgtgc
1681 acgacttcct caccaccccc aggttccctg cagatgtcgt gtgtgtcctg agtgtttctt
1741 tggttctttg cacgccaagt ctcttggttg taccatgtga cacaccctgt gcactggtcg
1801 ctgtcttcgt ggcttccacc cttgttaatg atgctcctgc ctctgcctcc cagcccctca
1861 cccagcacag ctctgcctgg acttggagag atgggaggca gacccccacc accatacatg
1921 ctgtctgtgg cccctcagac attctgtttc atctcccatt catctccctc ctcccaccgt
1981 gtcagttttt ctgcctttcc ctgctctgtt cttccccctc cttaggcccc agcctgggcc
2041 cagacccatc ctcccagcca ggtttccctc cagcaggctc cttccctccc tgtcacctcc
2101 ctctcaccaa cccggggtct gagcccctca ttcctgaccg tccgtgttct caggagtggt
2161 tgaggacaca gggccccagc ccagccctct gcacccccca gcccggccat ctgcgcccca
2221 cagccccttt ggagcttttc tcttgtcctc tcactccttc ccagaagttt ttgcacagaa
2281 cttcattttg aaagtgtttt tctcattctc catacctccc ccaagctctc ctccagccct
2341 tcccagggct cagccctgct gtcctgagcg tctcctgggc cagagagagg agatgggggt
2401 gggagggact gagttgatgt tgggtttttc attcaataaa ttggtgattt cttacaaaaa
2461 aaaaaaaaaa aaaaaaaaaa aaa
//