LOCUS BC003144 1690 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens protein phosphatase 1, regulatory (inhibitor) subunit
11, mRNA (cDNA clone MGC:3857 IMAGE:2823116), complete cds.
ACCESSION BC003144
VERSION BC003144.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1690)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1690)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: g Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 11386174
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..1690
/db_xref="H-InvDB:HIT000086220_05"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3857 IMAGE:2823116"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1690
/gene="PPP1R11"
/gene_synonym="HCG-V"
/gene_synonym="HCGV"
/gene_synonym="TCTEX5"
/db_xref="GeneID:6992"
/db_xref="HGNC:HGNC:9285"
/db_xref="MIM:606670"
CDS 408..632
/gene="PPP1R11"
/gene_synonym="HCG-V"
/gene_synonym="HCGV"
/gene_synonym="TCTEX5"
/codon_start=1
/product="PPP1R11 protein"
/protein_id="AAH03144.1"
/db_xref="GeneID:6992"
/db_xref="HGNC:HGNC:9285"
/db_xref="MIM:606670"
/translation="MGRRSSKCCCIYEKPRAFGESSTESDEEEEEGCGHTHCVRGHRK
GRRRATLGPTPTTPPQPPDPSQPPPGPMQH"
BASE COUNT 431 a 471 c 373 g 415 t
ORIGIN
1 ccaggttatc cccaggggtg gagaagcgga ggcccaggag gagggggaat aaagaaggtg
61 gaggatcctg gctaccactc tgaatccgat accgcttctc ttagacctca gcgacagaaa
121 aagggaaggg tgtctcatcc cccttcctcc tctcctccct gtcctgagcc ttagccatgg
181 ccgaggcagg ggctgggctg agcgagaccg tcactgagac aacggttacc gtgacaaccg
241 agcccgatga tttggggagg aagacggaga aacagcaagg attatatttt cctttgaaga
301 gttgctggga cctttcctag gagaaccgga gccttaccat caaacttcgg aaacggaagc
361 cagagaaaaa ggtagaatgg acaagtgaca ctgtggacaa tgaacacatg ggccgccgct
421 catccaaatg ctgctgtatt tatgagaaac ctcgggcctt tggcgagagc tccacggaaa
481 gtgatgagga ggaagaagag ggctgtggtc atacacactg tgtacgtggc caccgcaaag
541 gacggcgtcg tgcaacccta ggaccgaccc ccaccacccc tccccagcct cctgaccctt
601 cccagccccc tccagggcca atgcagcact aaatccctct ctcctccagc attcctgtgt
661 ctgtctggcc ctaaatgtat ccatgtggct acttctccag ccccctcctt ccctctcttc
721 tgcctgatag agggaagagg aagaggagga cgaacagaga tcctgaaatt ctgacttgct
781 gctattccag aacccagcct cctgggtttc cccagtcctc atttttcctc ccaataccca
841 cccttctctc tcgagggatc taggcacctt ggtcccagtg tcttcctttt gttctcactg
901 ccaaactgcc tgtcctggga tctagttatc ttggccctgc actctcaaca tgagtagcga
961 acacttaaat tgggttttca acagtcccag ctttcactgc cagggtccca gtcagattcc
1021 aggaatttgc gccctaactt tgcttgctaa tcctggttta gagctatccc actaaaatat
1081 ttaatcctaa ttcttagtcc ttgcctgtga gatatgaggt cttacaggag acctcagagc
1141 tcccagccct tctcctcctg ctaacccttc tcacaccctc aagaggagtt agaaaagagg
1201 tccttgtcat tctcacctct tatggaaaat ggaataagaa ataatcatat cctttcttcc
1261 cacccttctc ctgttattta ggatttctga caaagctggc ttgagattgg tcacttagag
1321 ccgactgtct cctctgcctt ttgtttttca gcttcagaga cagatccaat atagtcccag
1381 ggacctgggt ctctgggaga ggaaggaaga gggagggagc aaagagattg gggtatgtcc
1441 cctgtagtac actcttacct cttacttcct agactttgat ttctccggca gcccagatgt
1501 tcagttctct tggcccctct ctacccctta ctgggatctg gttttcattt tccggtcctt
1561 ttgccataca cagttacaga gatcagtcaa atccatacca ccactgagat ctcatttatt
1621 gccacagatg cacaaaataa ataacccaaa atcacaaaaa aaaaaaaaaa aaaaaaaaaa
1681 aaaaaaaaac
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