LOCUS BC003126 3070 bp mRNA linear HUM 02-DEC-2006
DEFINITION Homo sapiens protocadherin alpha 2, mRNA (cDNA clone MGC:3223
IMAGE:3503666), complete cds.
ACCESSION BC003126
VERSION BC003126.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3070)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3070)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 6 Row: p Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14165403.
FEATURES Location/Qualifiers
source 1..3070
/db_xref="H-InvDB:HIT000031447"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3223 IMAGE:3503666"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3070
/gene="PCDHA2"
/gene_synonym="PCDH-ALPHA2"
/db_xref="GeneID:56146"
/db_xref="HGNC:HGNC:8668"
/db_xref="MIM:606308"
CDS 107..2533
/gene="PCDHA2"
/gene_synonym="PCDH-ALPHA2"
/codon_start=1
/product="protocadherin alpha 2"
/protein_id="AAH03126.1"
/db_xref="GeneID:56146"
/db_xref="HGNC:HGNC:8668"
/db_xref="MIM:606308"
/translation="MASSIRRGRGAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTF
VGRIAQDLGLELEELVPRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAEC
SIHVEVIVDRPLQVFHVEVEVKDINDNPPIFPMTVKTIRFPESRLLDSRFPLEGASDA
DIGVNALLSYKLSSSEFFFLDIQANDELSESLSLVLGKSLDREETAEVNLLLVATDGG
KPELTGTVQILIKVLDVNDNEPTFAQSVYKVKLLENTANGTLVVKLNASDADEGPNSE
IVYSLGSDVSSTIQTKFTIDPISGEIRTKGKLDYEEAKSYEIQVTATDKGTPSMSGHC
KISLKLVDINDNTPEVSITSLSLPISENASLGTVIALITVSDRDSGTNGHVTCSLTPH
VPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPSLWATTSVSIEVADVND
NAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQENALVSYSLVERRVGERALSSYV
SVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPLGSNVTLQVFVLDENDNAPALL
APRAGTAAGAVSELVPWSVGAGHVVAKVRAVDADSGYNAWLSYELQLGTGSARIPFRV
GLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATVLVSLVESGQAPKASSRA
WVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTALRCSVPPTEGARAPGKPTLV
CSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGPDSAEEKQLSESEYVGKIW
NFNLQIQLAS"
BASE COUNT 740 a 723 c 871 g 736 t
ORIGIN
1 agaagcggag gaataagaga agcagcagga ctttaacaga gactagaata tttaaatttt
61 tgcaaaacat gctcttctaa tttgatcaaa acattgagga ttggtaatgg cgtcttctat
121 cagaaggggc cgaggggcct ggacacggct gctctcgctt ctgctcctcg cagcctggga
181 ggtggggagc ggccagctcc gctactccgt ccccgaggag gccaaacacg gcaccttcgt
241 gggccgcatc gcgcaggacc tggggctgga gctggaggag ctggtgccgc gcctgttccg
301 ggtggcgtcc aaaagacacg gggaccttct ggaggtaaat ctgcagaatg gcattttgtt
361 tgtgaattct cggatcgacc gggaggagct gtgcgggcgg agcgcggaat gtagcatcca
421 cgtggaggtg atcgtggaca ggccgctgca ggttttccat gtggaagtgg aggtgaagga
481 cattaacgac aacccgccaa tatttccaat gacagtaaag actatccggt ttcccgaatc
541 aaggctgctt gattctcggt ttcctctaga gggagcatct gatgcagata taggagtaaa
601 tgctcttctc tcctacaagc tcagctccag tgagtttttc ttcctagata tacaggcaaa
661 tgatgaacta agcgaatctt tgtctctcgt gctggggaaa tcgctggaca gagaggaaac
721 tgctgaggtt aatttgttac tggtggctac tgatgggggc aaacctgagc tcacgggcac
781 cgttcaaata cttattaagg tattagatgt aaatgacaat gaaccaactt ttgcccaatc
841 agtttacaaa gtaaaattgt tagagaatac ggcaaatggg accttagtgg ttaagttaaa
901 cgcttctgat gcagatgaag gaccgaacag cgagattgtg tattcactcg gtagtgatgt
961 gtcctccact atacagacta agtttaccat agatcccatc tcaggggaaa tcagaactaa
1021 gggaaaatta gattatgaag aagcaaagtc ctacgagatt caggtcactg caactgacaa
1081 aggaacccct tcaatgtcag gacattgtaa aatttcatta aaacttgtgg acatcaatga
1141 taacacacca gaagtctcaa taacgtctct ctcacttccc atctcagaga acgcttccct
1201 gggcactgtc attgctctca tcacggtgtc ggatcgcgac tctggtacga atggacatgt
1261 cacctgctcc ctgacgcccc acgtcccttt caagctggtg tccaccttca agaattacta
1321 ctcgttggtg ctggacagcg ccctggaccg cgagagcgtg tcagcctatg agctggtggt
1381 gaccgcacgg gacgggggct cgccttcact gtgggccacc accagcgtgt ccatcgaggt
1441 ggccgacgtg aacgacaacg cgccggcgtt cgcacagcct gagtacacag tattcgtgaa
1501 ggagaacaac ccgccgggct gccacatctt cacggtgtca gcgtgggatg cggacgcgca
1561 ggagaacgcg ctggtgtcct actcgctggt ggagcggcgg gtgggcgagc gcgcgttgtc
1621 gagctacgtt tcggtgcacg cggagagcgg caaggtgtac gcgctgcagc cgctggacca
1681 cgaggaagtg gagctgctgc agttccaggt gagcgcgcgg gatgcgggcg tgccgcctct
1741 gggcagcaac gtgacgctgc aggtgttcgt gctggacgag aacgacaacg cgccggcact
1801 gttggcgcct agggctggca ccgctgctgg cgcagtgagt gagctggtgc cgtggtcggt
1861 gggtgcaggg cacgtggtgg cgaaggtgcg cgcagtggac gctgactcag gctacaacgc
1921 gtggctttcg tacgagcttc agctgggtac tggcagcgct cgcatcccgt tccgcgtggg
1981 gctatacacg ggtgagatca gcacgacacg tgccctagac gaggctgact cccctcgaca
2041 ccgcctactc gtgctggtga aggaccacgg cgaaccagcg ttgacagcca cggccaccgt
2101 gttagtgtcg ttggtggaaa gtggccaggc acccaaggcc tcgtcgcggg cgtgggtggg
2161 cgccgcgggc tcagaggcta cgctggtgga tgtcaacgtg tacctgatca tcgccatctg
2221 cgcggtatcc agcctgttgg tgctcacggt gctgctgtac actgcgctgc ggtgctcggt
2281 gccacccacc gagggtgcgc gcgcgccagg aaagcccacg ctggtgtgct ccagcgccgt
2341 ggggagctgg tcttactcgc agcagaggcg gcagagggtg tgctctgggg aggacccccc
2401 caagacggac ctcatggcct tcagccctag cttatctcaa ggtccagact ccgcagaaga
2461 gaaacagctc tcagaatcag aatacgtagg aaagatatgg aacttcaatc ttcaaatcca
2521 gcttgcctct tgaaactatt gtctaacaag actcttggca aagacatttt gaagactttg
2581 gaattttcac ttcacagatg tactgatgct atgccaaata aatattgaat agctaccaaa
2641 taaacattgt tttctattct gctgcattcc ccatctgtac attaaaatac ctggtaaatg
2701 aaaatattac aaatgaaatg ggtgaaaatg gaattcttcc tccttttttc caatgtgctt
2761 gatgtcaatg atcattttgt aaaaatatag tttgggtccc cacatagtga aagtactctg
2821 gtttctgttt gattcagaaa tttggtgggt tttttgttgt tgttttggtt tttgtgtgtg
2881 tgtgtttgtg tgagtgtagt tcttcaatag agagggagcg taaagctatt ttcactagat
2941 tgattttttg tttagacaaa caggatgaaa ataactttat ggatatagga ggcaaggaaa
3001 gtttttaaat ggctaccatt atgtctttat atattaaatt tctttatgta agaaaaaaaa
3061 aaaaaaaaaa
//