LOCUS BC003125 3254 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens transmembrane protein 43, mRNA (cDNA clone MGC:3222
IMAGE:3503636), complete cds.
ACCESSION BC003125
VERSION BC003125.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3254)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3254)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 6 Row: f Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13236586.
FEATURES Location/Qualifiers
source 1..3254
/db_xref="H-InvDB:HIT000031446"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3222 IMAGE:3503636"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3254
/gene="TMEM43"
/gene_synonym="DKFZp586G1919"
/gene_synonym="MGC3222"
/db_xref="GeneID:79188"
/db_xref="HGNC:HGNC:28472"
CDS 150..1352
/gene="TMEM43"
/gene_synonym="DKFZp586G1919"
/gene_synonym="MGC3222"
/codon_start=1
/product="transmembrane protein 43"
/protein_id="AAH03125.1"
/db_xref="GeneID:79188"
/db_xref="HGNC:HGNC:28472"
/translation="MAANYSSTSTRREHVKVKTSSQPGFLERLSETSGGMFVGLMAFL
LSFYLIFTNEGRALKTATSLAEGLSLVVSPDSIHSVAPENEGRLVHIIGALRTSKLLS
DPNYGVHLPAVKLRRHVEMYQWVETEESREYTEDGQVKKETRYSYNTEWRSEIINSKN
FDREIGHKNPSAMAVESFMATAPFVQIGRFFLSSGLIDKVDNFKSLSLSKLEDPHVDI
IRRGDFFYHSENPKYPEVGDLRVSFSYAGLSGDDPDLGPAHVVTVIARQRGDQLVPFS
TKSGDTLLLLHHGDFSAEEVFHRELRSNSMKTWGLRAAGWMAMFMGLNLMTRILYTLV
DWFPVFRDLVNIGLKAFAFCVATSLTLLTVAAGWLFYRPLWALLIAGLALVPILVART
RVPAKKLE"
BASE COUNT 817 a 814 c 784 g 839 t
ORIGIN
1 ggtaactgca gtaagtcccg cttggccctg gagtccacgc ggattttcga agctggggct
61 ggcaagaggc cgctggacac cacgctccag tcgtcagccc acttcctagc tgaacagcgc
121 gaggcggcgg cagcgagccg ggtcccacca tggccgcgaa ttattccagt accagtaccc
181 ggagagaaca tgtcaaagtt aaaaccagct cccagccagg cttcctggaa cggctgagcg
241 agacctcggg tgggatgttt gtggggctca tggccttcct gctctccttc tacctaattt
301 tcaccaatga gggccgcgca ttgaagacgg caacctcatt ggctgagggg ctctcgcttg
361 tggtgtctcc cgacagcatc cacagtgtgg ctccggagaa tgaaggaagg ctggtgcaca
421 tcattggcgc cttacggaca tccaagcttt tgtctgatcc aaactatggg gtccatcttc
481 cggctgtgaa actgcggagg cacgtggaga tgtaccaatg ggtagaaact gaggagtcca
541 gggagtacac cgaggatggg caggtgaaga aggagacgag gtattcctac aacactgaat
601 ggaggtcaga aatcatcaac agcaaaaact tcgaccgaga gattggccac aaaaacccca
661 gtgccatggc agtggagtca ttcatggcaa cagccccctt tgtccaaatt ggcaggtttt
721 tcctctcgtc aggcctcatc gacaaagtcg acaacttcaa gtccctgagc ctatccaagc
781 tggaggaccc tcatgtggac atcattcgcc gtggagactt tttctaccac agcgaaaatc
841 ccaagtatcc agaggtggga gacttgcgtg tctccttttc ctatgctgga ctgagcggcg
901 atgaccctga cctgggccca gctcacgtgg tcactgtgat tgcccggcag cggggtgacc
961 agctagtccc attctccacc aagtctgggg ataccttact gctcctgcac cacggggact
1021 tctcagcaga ggaggtgttt catagagaac taaggagcaa ctccatgaag acctggggcc
1081 tgcgggcagc tggctggatg gccatgttca tgggcctcaa ccttatgaca cggatcctct
1141 acaccttggt ggactggttt cctgttttcc gagacctggt caacattggc ctgaaagcct
1201 ttgccttctg tgtggccacc tcgctgaccc tgctgaccgt ggcggctggc tggctcttct
1261 accgacccct gtgggccctc ctcattgccg gcctggccct tgtgcccatc cttgttgctc
1321 ggacacgggt gccagccaaa aagttggagt gaaaagaccc tggcacccgc ccgacacctg
1381 cgtgagccct aggatccagg tcctctctca cctctgaccc agctccatgc cagagcagga
1441 gccccggtca attttggact ctgcactccc tctcctcttc aggggccaga cttggcagca
1501 tgtgcaccag gttggtgttc accagctcat gtcttcccca catctcttct tgccagtaag
1561 cagctttggt gggcagcagc agctcatgaa tggcaagctg acagcttctc ctgctgtttc
1621 cttcctctct tggactgagt gggtacggcc agccactcag cccattggca gctgacaacg
1681 cagacacgct ctacggaggc ctgctgataa agggctcagc cttgccgtgt gctgcttctc
1741 atcactgcac acaagtgcca tgctttgcca ccaccaccaa gcacatctgt gatcctgaag
1801 ggcggccgtt agtcattact gctgagtcct gggtcaccag cagacacact gggcatggac
1861 ccctcaaagc aggcacaccc aaaacacaag tctgtggcta gaacctgatg tggtgtttaa
1921 aagagaagaa acactgaaga tgtcctgagg agaaaagctg gacatatact gggcttcaca
1981 cttatcttat ggcttggcag aatctttgta gtgtgtggga tctctgaagg ccctatttaa
2041 gtttttcttc gttactttgc tgcttcatgt gtactttcct accccaagag gaagttttct
2101 gaaataagat ttaaaaacaa aacaaaaaaa acacttaata tttcagactg ttacaggaaa
2161 caccctttag tctgtcagtt gaattcagag cactgaaagg tgttaaattg gggtatgtgg
2221 tttgattgat aaaaagttac ctctcagtat tttgtgtcac tgagaagctt tacaatggat
2281 gcttttgaaa caagtatcag caaaaggatt tgttttcact ctgggaggag agggtggaga
2341 aagcacttgc tttcatcctc tggcatcgga aactccccta tgcacttgaa gatggtttaa
2401 aagattaaag aaacgattaa gagaaaaggt tggaagcttt atactaaatg ggctccttca
2461 tggtgacgcc ccgtcaacca caatcaagaa ctgaggcctg aggctggttg tacaatgccc
2521 acgcctgcct ggctgctttc acctgggagt gctttcgatg tgggcacctg ggcttcctag
2581 ggctgcttct gagtggttct ttcacgtgtt gtgtccatag ctttagtctt cctaaataag
2641 atccacccac acctaagtca cagaatttct aagttcccca actactctca caccctttta
2701 aagataaagt atgttgtaac caggatgtct taaatgattc tttgtgtacc ttttctgtca
2761 tattcagaaa ccgttttgtg cctgctggga gtaattcctt tagcaattaa gtatttggta
2821 gctgaataag gggtcagaac ttctgaaacc agagatctgt aatcatctct attggcctgg
2881 ggtgcctgtg ctataaatga gtttcttcac atgaaaaaca cagccagccc aagatgactt
2941 atctgggttt aggattcaat agtattcact aactgcttat tacatgagca atttcatcaa
3001 atctccaaac tcttaaagga tgctttcgga aaacacgctg tatacctaga tgatgactaa
3061 atgcaaaatc cttgggcttt ggtttttttc tagtaaggat tttaaataac tgccgacttc
3121 aaaagtgttc ttaaaacgaa agataatgtt aagaaaaatt tgaaagcttt ggaaaaccaa
3181 atttgtaata tcattgtatt ttttattaaa agttttgtaa taaatttcta aattataaaa
3241 aaaaaaaaaa aaaa
//