LOCUS BC003101 1724 bp mRNA linear HUM 06-MAR-2007
DEFINITION Homo sapiens cleavage and polyadenylation specific factor 4, 30kDa,
mRNA (cDNA clone MGC:1870 IMAGE:3356071), complete cds.
ACCESSION BC003101
VERSION BC003101.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1724)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1724)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 6 Row: i Column: 6.
FEATURES Location/Qualifiers
source 1..1724
/db_xref="H-InvDB:HIT000031429"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1870 IMAGE:3356071"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1724
/gene="CPSF4"
/gene_synonym="CPSF30"
/gene_synonym="NAR"
/gene_synonym="NEB1"
/db_xref="GeneID:10898"
/db_xref="HGNC:HGNC:2327"
/db_xref="MIM:603052"
CDS 59..793
/gene="CPSF4"
/gene_synonym="CPSF30"
/gene_synonym="NAR"
/gene_synonym="NEB1"
/codon_start=1
/product="cleavage and polyadenylation specific factor 4,
30kDa"
/protein_id="AAH03101.1"
/db_xref="GeneID:10898"
/db_xref="HGNC:HGNC:2327"
/db_xref="MIM:603052"
/translation="MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFF
LKAACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKF
GECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGP
SCKFMHPRFELPMGTTEQPPLPQQTQPPAKQRTPQVIGVMQSQNSSAGNRGPRPLEQV
TCYKCGEKGHYANRCTKGHLAFLSGQ"
BASE COUNT 387 a 455 c 498 g 384 t
ORIGIN
1 gcgagaaggc tgcaggagac cgagggggag ccgggccggt ggggccgccg ccgccgccat
61 gcaggaaatc atcgccagcg tggaccacat caagtttgac ttggagatcg cggtggagca
121 gcagctgggg gcgcagccgc tgcccttccc cggcatggac aagtcgggcg ctgctgtctg
181 tgaattcttt ttgaaagctg cctgcggcaa agggggcatg tgtccgtttc gccacatcag
241 tggtgagaag acagttgtgt gcaaacactg gctgcgtggc ctatgcaaga aaggggacca
301 gtgtgagttc ctgcatgagt atgacatgac caagatgccc gagtgctact tctactccaa
361 gttcggggag tgcagcaaca aggaatgtcc cttcctgcac atcgaccccg agtccaagat
421 caaggactgt ccttggtatg accgtggctt ctgcaagcac ggtcccctct gcaggcaccg
481 gcacacacgg agagtcatct gtgtgaatta cctcgtggga ttctgcccgg aggggccctc
541 gtgtaaattc atgcaccctc gatttgaact gcccatggga accaccgagc agcccccact
601 gccgcagcag acacagcctc cagcaaagca gagaaccccg caggtcatcg gggtcatgca
661 gagtcaaaac agcagcgcgg gcaaccgggg accccggcca ctggagcagg tcacctgtta
721 caagtgtggc gagaaaggac actacgccaa cagatgcacc aaagggcact tggcctttct
781 cagtggacag tgacagcagc tggagccagc tccgagcagc ccgggggccc cgctgttggg
841 agtgtgcatt taactgtttc atgcgcttgt tggcgcgact gtggctcgag ctggcccgca
901 gacacgtggg tttcatcact ctgaggggcc acgtctgtta gtttcctatc attttgcctt
961 agtatttttt gaaaaaggga catgtgtcct gtgggtccct gcagtcgaca tcatgtttgg
1021 ctgggcatcg atgcctcctt tctgggactc ccggcacaac tcccctcatc cagggaggga
1081 ggcagctgct ggggaggggc ttggctaggt agttctgtgt ggcggtggtc attcccctca
1141 ttaaacacca gttcttggtg acgccagggg ctggtaggtc attcaaagct gtggccagct
1201 cacgcctgct tcctccctcc ctgccctgct gaatcctaaa gctgtgccta tatctgtgat
1261 ttgaatgagg gagccctttg gggcaaattc aggtgccccc attgcctcag gctggccctg
1321 gtcccaggtg gcagcggttg aggaggggta cagggctctc aagcctgagg ttttcttctc
1381 tgggcttaat tttctcttgg ggtacgtgcc tgacagtgtt taaggtgtcc gttgaactgg
1441 agttgcagac ttttaaatag atgacccctt cagatcatct gtgcctacct cctgcccatc
1501 aggcgtctac actgtcactc agacacctgt ggcatgtgga ggagactgcc ctgtcctgag
1561 cctggaaaat gtgaaactgt ctcctgcaac ctgctgggca tgtgggcctg gctgtgttca
1621 attgcaagaa caatttttat gaaatggatt aaagcttgtt ttttaaaaaa aaaaaaaaaa
1681 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaacct cggg
//