LOCUS BC003011 2074 bp mRNA linear HUM 03-OCT-2003
DEFINITION Homo sapiens syntaxin 1A (brain), mRNA (cDNA clone MGC:4038
IMAGE:2820851), complete cds.
ACCESSION BC003011
VERSION BC003011.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2074)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2074)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (06-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: b Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4759181.
FEATURES Location/Qualifiers
source 1..2074
/db_xref="H-InvDB:HIT000031358"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4038 IMAGE:2820851"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2074
/gene="STX1A"
/gene_synonym="HPC-1"
/gene_synonym="p35-1"
/gene_synonym="STX1"
/db_xref="GeneID:6804"
/db_xref="MIM:186590"
CDS 29..784
/gene="STX1A"
/gene_synonym="HPC-1"
/gene_synonym="p35-1"
/gene_synonym="STX1"
/codon_start=1
/product="STX1A protein"
/protein_id="AAH03011.1"
/db_xref="GeneID:6804"
/db_xref="MIM:186590"
/translation="MKDRTQELRTAKDSDDDDDVAVTVDRDRFMDEFFEQVEEIRGFI
DKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ
EEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTT
TSEELEDMLESGNPAIFASGIIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMD
MAMLVESQTMWRGPCLTPRRPSSTRARRAGRKS"
misc_feature 113..616
/gene="STX1A"
/gene_synonym="HPC-1"
/gene_synonym="p35-1"
/gene_synonym="STX1"
/note="Syntaxin; Region: Syntaxin"
/db_xref="CDD:pfam00804"
BASE COUNT 445 a 641 c 595 g 393 t
ORIGIN
1 agccggcgcc gctgccactc ccgggagcat gaaggaccga acccaggagc tccgcacggc
61 caaggacagc gatgatgatg atgatgtcgc tgtcaccgtg gaccgagacc gcttcatgga
121 tgagttcttt gagcaggtgg aggagattcg aggcttcatt gacaagatcg cagagaacgt
181 ggaggaggtg aagcggaagc acagtgccat cctggcatcc cccaaccccg acgagaagac
241 gaaggaggag ctggaagaac tcatgtccga cataaagaag acagcaaaca aagttcgttc
301 caagttaaag agcatcgagc agtccatcga gcaagaggaa ggcctgaacc gctcctccgc
361 tgacctgagg atccggaaga cacagcactc cacgctgtcc agaaagtttg tggaggtcat
421 gtcggagtac aacgccacgc agtccgacta ccgcgagcgc tgcaaaggcc gcatccagag
481 gcagctggag atcaccggca ggaccacgac cagtgaggag ctggaggaca tgctggagag
541 tgggaacccc gccatctttg cctctgggat catcatggac tccagcatct cgaagcaggc
601 tctgagcgag attgagacgc ggcacagtga gatcatcaag ctggagaaca gcatccgtga
661 gctacacgac atgttcatgg acatggccat gctcgtggag agccagacta tgtggagagg
721 gccgtgtctg acaccaagaa ggccgtcaag taccagagca aggcgcgccg gaagaaaatc
781 atgatcatca tctgctgtgt gatcctgggc atcgtcatcg cctccactgt tgggggcatc
841 ttcgcctaga agccacccaa actgccactc cactccaggt gggccactcc aaggaggccc
901 tggctgctgc cacctggctg ggctgccctc ccaacccccg cctctggctc agagcaccct
961 ccctcccggc ccccatgctc ccttctctgc catgggccct ccgtccccgc cccgtgtcgt
1021 gtgcatgatc tctgtgagtg tgcgtctgta cgggaagagg cagagggagg cagccagcgg
1081 ggcgtgatgc agtgtgcaca gcgaggagca gacccaggca gggccgccag ggtgacacag
1141 gccacccttc cttgccttca gtaactcggt gggcccaggt tctgctcttc cctggggacc
1201 ctaacctcgc ctccagctga cctgccctgt cctctccagc tgtccccaca agcagagccc
1261 tgaggggtgg ggaccagctg gccacatggt gctgcttttc aggttagggg agaggtggcc
1321 ctgagggaca gcccagctct gagtctcagt cgctgatcac tgccagggag gctcaggctg
1381 ccatggctcc aggctccctc ccctgcctag gggcaaagtc catcgggtcc tgggcctcag
1441 cttcccttcc cacattcctc cggccccagg agcaacccct tgggctaggt ctgaccccag
1501 gtgtccctct ggaaggggct ggctggtgcc ctatttccag ccaccccagc agctagggag
1561 gcaaagcagg ctgcagtcag tccctcaagc cagcgttgca tgtttgggat ggtggctcct
1621 gttgtcttgc gctctgggaa gtcagatgtc atttcaggcc tgcagtctca tcctgccctt
1681 gccatcctcc catcgatgtg ccacgtgggt gtcacgtgtc ccagatgcag tattcggcag
1741 ccagccgggg agggctacct cctcctcctc accaccttgg ggcttctcat gggaaatgtg
1801 cccccgcccc aggaccctct cccttgtgga caggcaggga gatgcatgcg agtgcatgca
1861 gcaggggatg gggccgtgtc cgtgtgcccc accctccctc ggctttactc ctgcccagtg
1921 actgtgacca ctgtccgtgt tgccttcttg aacagcgatt ccccccaacc ccttcaccaa
1981 aggtcttggt acaaccagct gcccattttg tgaaattttt atgtagaata aacatttgta
2041 tctgtaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
//