LOCUS BC002995 1312 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens stratifin, mRNA (cDNA clone MGC:3828 IMAGE:2822397),
complete cds.
ACCESSION BC002995
VERSION BC002995.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1312)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1312)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: h Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 45238846.
FEATURES Location/Qualifiers
source 1..1312
/db_xref="H-InvDB:HIT000031343"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3828 IMAGE:2822397"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1312
/gene="SFN"
/db_xref="GeneID:2810"
/db_xref="HGNC:HGNC:10773"
/db_xref="MIM:601290"
CDS 52..798
/gene="SFN"
/codon_start=1
/product="stratifin"
/protein_id="AAH02995.1"
/db_xref="GeneID:2810"
/db_xref="HGNC:HGNC:10773"
/db_xref="MIM:601290"
/translation="MERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLL
SVAYKNVVGGQRAAWRVLSSIEQKSNEEGSEEKGPEVREYREKVETELQGVCDTVLGL
LDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKK
EMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTL
IMQLLRDNLTLWTADNAGEEGGEAPQEPQS"
BASE COUNT 276 a 406 c 405 g 225 t
ORIGIN
1 ttggtcccag gcagcagtta gcccgccgcc cgcctgtgtg tccccagagc catggagaga
61 gccagtctga tccagaaggc caagctggca gagcaggccg aacgctatga ggacatggca
121 gccttcatga aaggcgccgt ggagaagggc gaggagctct cctgcgaaga gcgaaacctg
181 ctctcagtag cctataagaa cgtggtgggc ggccagaggg ctgcctggag ggtgctgtcc
241 agtattgagc agaaaagcaa cgaggagggc tcggaggaga aggggcccga ggtgcgtgag
301 taccgggaga aggtggagac tgagctccag ggcgtgtgcg acaccgtgct gggcctgctg
361 gacagccacc tcatcaagga ggccggggac gccgagagcc gggtcttcta cctgaagatg
421 aagggtgact actaccgcta cctggccgag gtggccaccg gtgacgacaa gaagcgcatc
481 attgactcag cccggtcagc ctaccaggag gccatggaca tcagcaagaa ggagatgccg
541 cccaccaacc ccatccgcct gggcctggcc ctgaactttt ccgtcttcca ctacgagatc
601 gccaacagcc ccgaggaggc catctctctg gccaagacca ctttcgacga ggccatggct
661 gatctgcaca ccctcagcga ggactcctac aaagacagca ccctcatcat gcagctgctg
721 cgagacaacc tgacactgtg gacggccgac aacgccgggg aagagggggg cgaggctccc
781 caggagcccc agagctgagt gttgcccgcc accgccccgc cctgccccct ccagtccccc
841 accctgccga gaggactagt atggggtggg aggccccacc cttctcccct aggcgctgtt
901 cttgctccaa agggctccgt ggagagggac tggcagagct gaggccacct ggggctgggg
961 atcccactct tcttgcagct gttgagcgca cctaaccact ggtcatgccc ccacccctgc
1021 tctccgcacc cgcttcctcc cgaccccagg accaggctac ttctcccctc ctcttgcctc
1081 cctcctgccc ctgctgcctc tgatcgtagg aattgaggag tgtcccgcct tgtggctgag
1141 aactggacag tggcaggggc tggagatggg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg
1201 cgcgcgcgcc agtgcaagac cgagattgag ggaaagcatg tctgctgggt gtgaccatgt
1261 ttcctctcaa taaagttccc ctgtgacact caaaaaaaaa aaaaaaaaaa aa
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