LOCUS BC002974 1425 bp mRNA linear HUM 04-NOV-2003 DEFINITION Homo sapiens latrophilin 1, mRNA (cDNA clone IMAGE:3535311), partial cds. ACCESSION BC002974 VERSION BC002974.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1425) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1425) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (06-FEB-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield, Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin, Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott, Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy, George Yang, Scott Zuyderduyn, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 8 Row: a Column: 23 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 22219461. FEATURES Location/Qualifiers source 1..1425 /db_xref="H-InvDB:HIT000086199" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:3535311" /tissue_type="Lung, small cell carcinoma" /clone_lib="NIH_MGC_7" /lab_host="DH10B-R" /note="Vector: pOTB7" gene <1..1425 /gene="LPHN1" /gene_synonym="CIRL1" /gene_synonym="FLJ11939" /gene_synonym="KIAA0821" /gene_synonym="LEC2" /db_xref="GeneID:22859" CDS <1..465 /gene="LPHN1" /gene_synonym="CIRL1" /gene_synonym="FLJ11939" /gene_synonym="KIAA0821" /gene_synonym="LEC2" /codon_start=1 /product="LPHN1 protein" /protein_id="AAH02974.1" /db_xref="GeneID:22859" /translation="VAGGPGGADRAEIELLYKALEEPLLLPRAQSVLYQSDLDESESC TAEDGATSRPLSSPPGRDSLYASGANLRDSPSYPDSSPEGPSEALPPPPPAPPGPPEI YYTSRPPALVARNPLQGYYQVRRPSHEGYLAAPGLEGPGPDGDGQMQLVTSL" misc_feature 4..462 /gene="LPHN1" /gene_synonym="CIRL1" /gene_synonym="FLJ11939" /gene_synonym="KIAA0821" /gene_synonym="LEC2" /note="Latrophilin; Region: Latrophilin Cytoplasmic C-terminal region. This family consists of the cytoplasmic C-terminal region in latrophilin. Latrophilin is a synaptic Ca2+ independent alpha- latrotoxin (LTX) receptor and is a novel member of the secretin family of G-protein coupled receptors that are involved in secretion. Latrophilin mRNA is present only in neuronal tissue. Lactrophillin interacts with G-alpha O" /db_xref="CDD:pfam02354" BASE COUNT 272 a 461 c 441 g 251 t ORIGIN 1 gtggcgggcg ggcccggggg tgctgaccgg gccgagattg aacttctcta taaggccctg 61 gaggagcctc tgctgctgcc ccgggcccag tcggtgctgt accagagcga tctggacgag 121 tcggagagct gcacggccga ggacggcgcc accagccggc ccctctcctc ccctcctggc 181 cgggactccc tctatgccag cggggccaac ctgcgggact caccctccta cccggacagc 241 agccctgagg ggcccagtga ggccctgccc ccaccccctc ccgcaccccc cggccccccc 301 gaaatctact acacctcgcg cccgccagcc ctggtggccc ggaatcccct gcagggctac 361 taccaggtgc ggcgtcctag ccacgagggc tacctggcag ccccaggcct tgaggggcca 421 gggcccgatg gggacgggca gatgcagctg gtcaccagtc tctgagggca cctcatggac 481 caggggctgg tggcccaggc cagggaggga accctgggca gggctctggt gggagaggga 541 gacagatgga ggcagtggct ggtgggccac tctctccagg tgcccctcag ccatgggccc 601 tacagtcccc tcaggggact ctaacctggg ggcctgaggt gccagggttc acagacaggg 661 tttcccacca gccacacgca ccagctctat ttgggggaag tgtagtgagg aggagcccag 721 aggaccccag gggagtgagg agggagaact tggaagggtg cagcccactt ccagactctc 781 ccctctccca cccttctacc ctgtgaaggg aaatgagggc tttagtttcc tgggcaggga 841 ggggcagctt ctgaggttgc caaaggcccc cactggatgg aacctgttag ctgctcctct 901 ccgcagccag aaatgctgcc ggctgcaccc agagggagca gtgaggcagg acagatggac 961 aggttcctcc tgcgctgtaa ttccctgctc cctggagact gggaaaaggc cgcagggcag 1021 ggggactggg cggtggtggc tggtggttta aaggttgaac tttctctgaa gctcctttcc 1081 ccttgctctt ggtccctgcc ccgcaagcaa acctgccccc tctgcctccc agtgcaccca 1141 atgaccccct cccttggggc gactcctgat gaagcacaac tccccgcagg gcccccagcc 1201 cacaggggtg gccatatttg ggcagttccc agtcctgtgg gctcggctat ctggggagca 1261 gattttgggt ctggatctcc ctggggagtg ggtcctgggc ttggatcttt ccctaggggg 1321 ccctcttact ccttcctctc tcctcctcct tccccattgc tgtaaatatt tcaacgaaat 1381 ggaaaagaaa aaaaaaagac aaaaaaaaaa aaaaaaaaaa aaaaa //